Cluster: A129.bin_3_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_3
- CGC Family ID: CGCFAM_00057
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1145 | 1137051 | 1138409 | + | GH1 |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1146 | 1138501 | 1139319 | + | Virul_fac_BrkB |
| pfam | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1147 | 1139355 | 1140479 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | A129_contig_815_corr_2_np12 | A129_contig_815_corr_2_np12_1148 | 1140540 | 1142357 | - | 1.A.33.1.4 |
Gene ID: A129_contig_815_corr_2_np12_1145
Type: CAZyme
Location: 1137051 - 1138409 (+)
Type: CAZyme
Location: 1137051 - 1138409 (+)
Gene ID: A129_contig_815_corr_2_np12_1146
Type: pfam
Location: 1138501 - 1139319 (+)
Type: pfam
Location: 1138501 - 1139319 (+)
Gene ID: A129_contig_815_corr_2_np12_1147
Type: pfam
Location: 1139355 - 1140479 (-)
Type: pfam
Location: 1139355 - 1140479 (-)
Gene ID: A129_contig_815_corr_2_np12_1148
Type: TC
Location: 1140540 - 1142357 (-)
Type: TC
Location: 1140540 - 1142357 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia ramosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.