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Cluster: A129.bin_1_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1166 1241229 1243055 + 4.A.1.2.6
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1167 1243135 1244607 + GH1
pfam A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1168 1244638 1245219 + His_Phos_1
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1169 1245237 1246673 + GH1
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1170 1246696 1248174 + GH1
TF A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1171 1248275 1250920 + TrmB
pfam A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1172 1250946 1251458 - DUF3284
TC A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1173 1251754 1252077 + 4.A.3.2.7
TC A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1174 1252103 1252402 + 4.A.3.2.2
TC A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1175 1252423 1253721 + 4.A.3.1.3
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1176 1253791 1255188 + GH4
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1177 1255201 1256637 + GH1
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1178 1256653 1259046 + GH3
CAZyme A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1179 1259059 1260531 + GH1
pfam A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1180 1260625 1261458 + S6PP | Hydrolase_3
TF A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1181 1261507 1261968 - Rrf2
TC A129_contig_32_corr_1_np12 A129_contig_32_corr_1_np12_1182 1262117 1264492 + 9.B.74.1.3
Gene ID: A129_contig_32_corr_1_np12_1166
Type: TC
Location: 1241229 - 1243055 (+)
Gene ID: A129_contig_32_corr_1_np12_1167
Type: CAZyme
Location: 1243135 - 1244607 (+)
Gene ID: A129_contig_32_corr_1_np12_1168
Type: pfam
Location: 1244638 - 1245219 (+)
Gene ID: A129_contig_32_corr_1_np12_1169
Type: CAZyme
Location: 1245237 - 1246673 (+)
Gene ID: A129_contig_32_corr_1_np12_1170
Type: CAZyme
Location: 1246696 - 1248174 (+)
Gene ID: A129_contig_32_corr_1_np12_1171
Type: TF
Location: 1248275 - 1250920 (+)
Gene ID: A129_contig_32_corr_1_np12_1172
Type: pfam
Location: 1250946 - 1251458 (-)
Gene ID: A129_contig_32_corr_1_np12_1173
Type: TC
Location: 1251754 - 1252077 (+)
Gene ID: A129_contig_32_corr_1_np12_1174
Type: TC
Location: 1252103 - 1252402 (+)
Gene ID: A129_contig_32_corr_1_np12_1175
Type: TC
Location: 1252423 - 1253721 (+)
Gene ID: A129_contig_32_corr_1_np12_1176
Type: CAZyme
Location: 1253791 - 1255188 (+)
Gene ID: A129_contig_32_corr_1_np12_1177
Type: CAZyme
Location: 1255201 - 1256637 (+)
Gene ID: A129_contig_32_corr_1_np12_1178
Type: CAZyme
Location: 1256653 - 1259046 (+)
Gene ID: A129_contig_32_corr_1_np12_1179
Type: CAZyme
Location: 1259059 - 1260531 (+)
Gene ID: A129_contig_32_corr_1_np12_1180
Type: pfam
Location: 1260625 - 1261458 (+)
Gene ID: A129_contig_32_corr_1_np12_1181
Type: TF
Location: 1261507 - 1261968 (-)
Gene ID: A129_contig_32_corr_1_np12_1182
Type: TC
Location: 1262117 - 1264492 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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