Cluster: A129.bin_1_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: A129.bin_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_979 | 1039432 | 1040421 | + | 9.B.157.1.2 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_980 | 1040453 | 1041550 | + | Glycos_transf_4 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_981 | 1041615 | 1041938 | + | 4.A.3.1.2 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_982 | 1042004 | 1042852 | - | Patatin | DUF6363 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_983 | 1043084 | 1043407 | + | CdAMP_rec |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_984 | 1043446 | 1044249 | - | CE4 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_985 | 1044362 | 1045465 | + | CE9 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_986 | 1045481 | 1047184 | + | Acetyltransf_1 | Mbeg1-like | Acetyltransf_3 | Acetyltransf_7 |
| NULL(UNKNOWN) | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_987 | 1047475 | 1048458 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_988 | 1048657 | 1050024 | + | 2.A.66.1.33 |
Gene ID: A129_contig_32_corr_1_np12_979
Type: TC
Location: 1039432 - 1040421 (+)
Type: TC
Location: 1039432 - 1040421 (+)
Gene ID: A129_contig_32_corr_1_np12_980
Type: pfam
Location: 1040453 - 1041550 (+)
Type: pfam
Location: 1040453 - 1041550 (+)
Gene ID: A129_contig_32_corr_1_np12_981
Type: TC
Location: 1041615 - 1041938 (+)
Type: TC
Location: 1041615 - 1041938 (+)
Gene ID: A129_contig_32_corr_1_np12_982
Type: pfam
Location: 1042004 - 1042852 (-)
Type: pfam
Location: 1042004 - 1042852 (-)
Gene ID: A129_contig_32_corr_1_np12_983
Type: pfam
Location: 1043084 - 1043407 (+)
Type: pfam
Location: 1043084 - 1043407 (+)
Gene ID: A129_contig_32_corr_1_np12_984
Type: CAZyme
Location: 1043446 - 1044249 (-)
Type: CAZyme
Location: 1043446 - 1044249 (-)
Gene ID: A129_contig_32_corr_1_np12_985
Type: CAZyme
Location: 1044362 - 1045465 (+)
Type: CAZyme
Location: 1044362 - 1045465 (+)
Gene ID: A129_contig_32_corr_1_np12_986
Type: pfam
Location: 1045481 - 1047184 (+)
Type: pfam
Location: 1045481 - 1047184 (+)
Gene ID: A129_contig_32_corr_1_np12_987
Type:
Location: 1047475 - 1048458 (+)
Type:
Location: 1047475 - 1048458 (+)
Gene ID: A129_contig_32_corr_1_np12_988
Type: TC
Location: 1048657 - 1050024 (+)
Type: TC
Location: 1048657 - 1050024 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.