Cluster: A129.bin_11_CGC24
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_11
- CGC Family ID: CGCFAM_02345
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_133 | 146532 | 147881 | + | 2.A.40.5.1 |
| STP | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_134 | 149083 | 150921 | - | SIS | SIS |
| TC | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_135 | 151052 | 152326 | - | 9.B.174.1.2 |
| pfam | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_136 | 152571 | 153479 | - | FtsX | FtsX_ECD |
| TC | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_137 | 153469 | 154155 | - | 3.A.1.140.1 |
| pfam | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_138 | 154300 | 155382 | - | HTH_30 | GGDEF_2 |
| TC | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_139 | 155547 | 156425 | - | 2.A.115.1.2 |
| pfam | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_140 | 156544 | 157230 | - | Glyco_tran_WecG |
| peptidase | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_141 | 157562 | 158545 | - | C40.UPW |
| CAZyme | A129_contig_815_corr_3_np12 | A129_contig_815_corr_3_np12_142 | 158785 | 161352 | - | GT51 |
Gene ID: A129_contig_815_corr_3_np12_133
Type: TC
Location: 146532 - 147881 (+)
Type: TC
Location: 146532 - 147881 (+)
Gene ID: A129_contig_815_corr_3_np12_134
Type: STP
Location: 149083 - 150921 (-)
Type: STP
Location: 149083 - 150921 (-)
Gene ID: A129_contig_815_corr_3_np12_135
Type: TC
Location: 151052 - 152326 (-)
Type: TC
Location: 151052 - 152326 (-)
Gene ID: A129_contig_815_corr_3_np12_136
Type: pfam
Location: 152571 - 153479 (-)
Type: pfam
Location: 152571 - 153479 (-)
Gene ID: A129_contig_815_corr_3_np12_137
Type: TC
Location: 153469 - 154155 (-)
Type: TC
Location: 153469 - 154155 (-)
Gene ID: A129_contig_815_corr_3_np12_138
Type: pfam
Location: 154300 - 155382 (-)
Type: pfam
Location: 154300 - 155382 (-)
Gene ID: A129_contig_815_corr_3_np12_139
Type: TC
Location: 155547 - 156425 (-)
Type: TC
Location: 155547 - 156425 (-)
Gene ID: A129_contig_815_corr_3_np12_140
Type: pfam
Location: 156544 - 157230 (-)
Type: pfam
Location: 156544 - 157230 (-)
Gene ID: A129_contig_815_corr_3_np12_141
Type: peptidase
Location: 157562 - 158545 (-)
Type: peptidase
Location: 157562 - 158545 (-)
Gene ID: A129_contig_815_corr_3_np12_142
Type: CAZyme
Location: 158785 - 161352 (-)
Type: CAZyme
Location: 158785 - 161352 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_I
Species
Eubacterium_I ramulus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.