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Cluster: A129.bin_11_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A129_contig_254 A129_contig_254_36 41324 42802 - GH77
TC A129_contig_254 A129_contig_254_37 43069 43947 - 3.A.1.1.45
TC A129_contig_254 A129_contig_254_38 43947 44789 - 3.A.1.1.45
TC A129_contig_254 A129_contig_254_39 44891 46258 - 3.A.1.1.45
NULL(UNKNOWN) A129_contig_254 A129_contig_254_40 46342 47985 - NULL(UNKNOWN)
[View Structural Homologs]
TC A129_contig_254 A129_contig_254_41 47975 49669 - 8.A.59.2.1
TF A129_contig_254 A129_contig_254_42 49641 51173 - HTH_AraC | HTH_AraC
CAZyme A129_contig_254 A129_contig_254_43 51177 53435 - GT35
TF A129_contig_254 A129_contig_254_44 53631 54497 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) A129_contig_254 A129_contig_254_45 54712 54993 - NULL(UNKNOWN)
[View Structural Homologs]
TC A129_contig_254 A129_contig_254_46 55098 56873 - 2.A.58.2.2
pfam A129_contig_254 A129_contig_254_47 57083 57559 - YibE_F
pfam A129_contig_254 A129_contig_254_48 57628 58293 - PhoU | PhoU
TC A129_contig_254 A129_contig_254_49 58403 59161 - 3.A.1.7.5
TC A129_contig_254 A129_contig_254_50 59247 60083 - 3.A.1.7.5
TC A129_contig_254 A129_contig_254_51 60083 60943 - 3.A.1.7.5
Gene ID: A129_contig_254_36
Type: CAZyme
Location: 41324 - 42802 (-)
Gene ID: A129_contig_254_37
Type: TC
Location: 43069 - 43947 (-)
Gene ID: A129_contig_254_38
Type: TC
Location: 43947 - 44789 (-)
Gene ID: A129_contig_254_39
Type: TC
Location: 44891 - 46258 (-)
Gene ID: A129_contig_254_40
Type:
Location: 46342 - 47985 (-)
Gene ID: A129_contig_254_41
Type: TC
Location: 47975 - 49669 (-)
Gene ID: A129_contig_254_42
Type: TF
Location: 49641 - 51173 (-)
Gene ID: A129_contig_254_43
Type: CAZyme
Location: 51177 - 53435 (-)
Gene ID: A129_contig_254_44
Type: TF
Location: 53631 - 54497 (+)
Gene ID: A129_contig_254_45
Type:
Location: 54712 - 54993 (-)
Gene ID: A129_contig_254_46
Type: TC
Location: 55098 - 56873 (-)
Gene ID: A129_contig_254_47
Type: pfam
Location: 57083 - 57559 (-)
Gene ID: A129_contig_254_48
Type: pfam
Location: 57628 - 58293 (-)
Gene ID: A129_contig_254_49
Type: TC
Location: 58403 - 59161 (-)
Gene ID: A129_contig_254_50
Type: TC
Location: 59247 - 60083 (-)
Gene ID: A129_contig_254_51
Type: TC
Location: 60083 - 60943 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A129_contig_254_43 vegetarian > omnivore 1.01931 0.00000

🧭 Explore Read Mapping of CGC

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