Cluster: A129.bin_11_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: A129.bin_11
- CGC Family ID: CGCFAM_04278
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_63 | A129_contig_63_464 | 491189 | 492664 | + | 2.A.66.2.16 |
| CAZyme | A129_contig_63 | A129_contig_63_465 | 492654 | 493703 | + | GT2 |
| pfam | A129_contig_63 | A129_contig_63_466 | 493708 | 495354 | + | NTP_transferase | Choline_kinase | APH | NTP_transf_3 |
| pfam | A129_contig_63 | A129_contig_63_467 | 495359 | 496066 | + | NTP_transferase | NTP_transf_3 |
| TC | A129_contig_63 | A129_contig_63_468 | 496087 | 497601 | + | 2.A.15.2.2 |
| CAZyme | A129_contig_63 | A129_contig_63_469 | 497747 | 498868 | + | GT4 |
| CAZyme | A129_contig_63 | A129_contig_63_470 | 498865 | 499920 | + | GT113 |
| CAZyme | A129_contig_63 | A129_contig_63_471 | 499917 | 500720 | + | GT111 |
Gene ID: A129_contig_63_464
Type: TC
Location: 491189 - 492664 (+)
Type: TC
Location: 491189 - 492664 (+)
Gene ID: A129_contig_63_465
Type: CAZyme
Location: 492654 - 493703 (+)
Type: CAZyme
Location: 492654 - 493703 (+)
Gene ID: A129_contig_63_466
Type: pfam
Location: 493708 - 495354 (+)
Type: pfam
Location: 493708 - 495354 (+)
Gene ID: A129_contig_63_467
Type: pfam
Location: 495359 - 496066 (+)
Type: pfam
Location: 495359 - 496066 (+)
Gene ID: A129_contig_63_468
Type: TC
Location: 496087 - 497601 (+)
Type: TC
Location: 496087 - 497601 (+)
Gene ID: A129_contig_63_469
Type: CAZyme
Location: 497747 - 498868 (+)
Type: CAZyme
Location: 497747 - 498868 (+)
Gene ID: A129_contig_63_470
Type: CAZyme
Location: 498865 - 499920 (+)
Type: CAZyme
Location: 498865 - 499920 (+)
Gene ID: A129_contig_63_471
Type: CAZyme
Location: 499917 - 500720 (+)
Type: CAZyme
Location: 499917 - 500720 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_I
Species
Eubacterium_I ramulus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A129_contig_63_470 | vegan > omnivore | 15.23364 | 0.01382 |