Cluster: A111.bin_5_CGC56
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: A111.bin_5
- CGC Family ID: CGCFAM_06553
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A111_contig_1048 | A111_contig_1048_2537 | 2968747 | 2971023 | - | GH3 |
| CAZyme | A111_contig_1048 | A111_contig_1048_2538 | 2971036 | 2973252 | - | GH36 |
| NULL(UNKNOWN) | A111_contig_1048 | A111_contig_1048_2539 | 2973330 | 2974019 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A111_contig_1048 | A111_contig_1048_2540 | 2974038 | 2975402 | - | GH175 |
| pfam | A111_contig_1048 | A111_contig_1048_2541 | 2975428 | 2976552 | - | GDPD |
| CAZyme | A111_contig_1048 | A111_contig_1048_2542 | 2976591 | 2978456 | - | GH127 |
| pfam | A111_contig_1048 | A111_contig_1048_2543 | 2978825 | 2980330 | - | SusD_RagB |
| TC | A111_contig_1048 | A111_contig_1048_2544 | 2980351 | 2983575 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | A111_contig_1048 | A111_contig_1048_2545 | 2983686 | 2983922 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A111_contig_1048 | A111_contig_1048_2546 | 2984387 | 2986195 | - | GH84 |
| CAZyme | A111_contig_1048 | A111_contig_1048_2547 | 2986345 | 2987454 | - | GH43_26 |
| CAZyme | A111_contig_1048 | A111_contig_1048_2548 | 2987700 | 2989523 | + | GH2 |
Gene ID: A111_contig_1048_2537
Type: CAZyme
Location: 2968747 - 2971023 (-)
Type: CAZyme
Location: 2968747 - 2971023 (-)
Gene ID: A111_contig_1048_2538
Type: CAZyme
Location: 2971036 - 2973252 (-)
Type: CAZyme
Location: 2971036 - 2973252 (-)
Gene ID: A111_contig_1048_2539
Type:
Location: 2973330 - 2974019 (-)
Type:
Location: 2973330 - 2974019 (-)
Gene ID: A111_contig_1048_2540
Type: CAZyme
Location: 2974038 - 2975402 (-)
Type: CAZyme
Location: 2974038 - 2975402 (-)
Gene ID: A111_contig_1048_2541
Type: pfam
Location: 2975428 - 2976552 (-)
Type: pfam
Location: 2975428 - 2976552 (-)
Gene ID: A111_contig_1048_2542
Type: CAZyme
Location: 2976591 - 2978456 (-)
Type: CAZyme
Location: 2976591 - 2978456 (-)
Gene ID: A111_contig_1048_2543
Type: pfam
Location: 2978825 - 2980330 (-)
Type: pfam
Location: 2978825 - 2980330 (-)
Gene ID: A111_contig_1048_2544
Type: TC
Location: 2980351 - 2983575 (-)
Type: TC
Location: 2980351 - 2983575 (-)
Gene ID: A111_contig_1048_2545
Type:
Location: 2983686 - 2983922 (+)
Type:
Location: 2983686 - 2983922 (+)
Gene ID: A111_contig_1048_2546
Type: CAZyme
Location: 2984387 - 2986195 (-)
Type: CAZyme
Location: 2984387 - 2986195 (-)
Gene ID: A111_contig_1048_2547
Type: CAZyme
Location: 2986345 - 2987454 (-)
Type: CAZyme
Location: 2986345 - 2987454 (-)
Gene ID: A111_contig_1048_2548
Type: CAZyme
Location: 2987700 - 2989523 (+)
Type: CAZyme
Location: 2987700 - 2989523 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides uniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A111_contig_1048_2540 | vegan > omnivore | 1.26267 | 0.03622 |
| A111_contig_1048_2541 | vegan > omnivore | 1.38722 | 0.02242 |
| A111_contig_1048_2542 | vegan > omnivore | 1.45531 | 0.02242 |
| A111_contig_1048_2543 | vegan > omnivore | 2.50834 | 0.02242 |
| A111_contig_1048_2543 | vegetarian > omnivore | 1.31338 | 0.02681 |
| A111_contig_1048_2544 | vegan > omnivore | 2.36220 | 0.02242 |
| A111_contig_1048_2545 | vegan > omnivore | 1.02365 | 0.02876 |
| A111_contig_1048_2547 | vegan > omnivore | 1.78302 | 0.02318 |