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Cluster: A111.bin_3_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme A111_contig_35 A111_contig_35_179 222753 224564 + GH2
pfam A111_contig_35 A111_contig_35_180 224642 225190 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC A111_contig_35 A111_contig_35_181 225315 227501 - 9.B.74.1.1
TC A111_contig_35 A111_contig_35_182 227505 230039 - 9.B.74.1.1
STP A111_contig_35 A111_contig_35_183 230283 230879 + TetR_N
TC A111_contig_35 A111_contig_35_184 230882 232252 + 2.A.22.5.3
pfam A111_contig_35 A111_contig_35_185 233219 234094 - BPD_transp_1
TC A111_contig_35 A111_contig_35_186 234078 234854 - 3.A.1.17.8
Gene ID: A111_contig_35_179
Type: CAZyme
Location: 222753 - 224564 (+)
Gene ID: A111_contig_35_180
Type: pfam
Location: 224642 - 225190 (+)
Gene ID: A111_contig_35_181
Type: TC
Location: 225315 - 227501 (-)
Gene ID: A111_contig_35_182
Type: TC
Location: 227505 - 230039 (-)
Gene ID: A111_contig_35_183
Type: STP
Location: 230283 - 230879 (+)
Gene ID: A111_contig_35_184
Type: TC
Location: 230882 - 232252 (+)
Gene ID: A111_contig_35_185
Type: pfam
Location: 233219 - 234094 (-)
Gene ID: A111_contig_35_186
Type: TC
Location: 234078 - 234854 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A111_contig_35_180 vegetarian > vegan 1.81570 0.03292
A111_contig_35_184 vegetarian > omnivore 1.09103 0.01743
A111_contig_35_186 vegetarian > omnivore 1.65124 0.01743
A111_contig_35_186 vegetarian > vegan 1.76104 0.02445

🧭 Explore Read Mapping of CGC

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