Cluster: A111.bin_3_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: A111.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A111_contig_35 | A111_contig_35_1504 | 1684120 | 1686276 | - | GH112 |
| pfam | A111_contig_35 | A111_contig_35_1505 | 1686395 | 1686574 | - | DUF6903 |
| TC | A111_contig_35 | A111_contig_35_1506 | 1686588 | 1687472 | - | 3.A.1.1.18 |
| TC | A111_contig_35 | A111_contig_35_1507 | 1687489 | 1688379 | - | 3.A.1.1.18 |
| STP | A111_contig_35 | A111_contig_35_1508 | 1688567 | 1689901 | - | SBP_bac_1 |
| TF | A111_contig_35 | A111_contig_35_1509 | 1690234 | 1691067 | + | HTH_AraC | HTH_AraC |
| CAZyme | A111_contig_35 | A111_contig_35_1510 | 1691178 | 1697048 | - | GH95 |
| TF | A111_contig_35 | A111_contig_35_1511 | 1697379 | 1698308 | + | HTH_AraC | HTH_AraC |
| CAZyme | A111_contig_35 | A111_contig_35_1512 | 1698413 | 1702174 | - | GH29 |
| CAZyme | A111_contig_35 | A111_contig_35_1513 | 1702270 | 1705893 | - | GH136 |
| NULL(UNKNOWN) | A111_contig_35 | A111_contig_35_1514 | 1705910 | 1706656 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A111_contig_35 | A111_contig_35_1515 | 1706954 | 1708042 | + | DnaJ | DnaJ_C |
| CAZyme | A111_contig_35 | A111_contig_35_1516 | 1708132 | 1713252 | - | GH101 |
Gene ID: A111_contig_35_1504
Type: CAZyme
Location: 1684120 - 1686276 (-)
Type: CAZyme
Location: 1684120 - 1686276 (-)
Gene ID: A111_contig_35_1505
Type: pfam
Location: 1686395 - 1686574 (-)
Type: pfam
Location: 1686395 - 1686574 (-)
Gene ID: A111_contig_35_1506
Type: TC
Location: 1686588 - 1687472 (-)
Type: TC
Location: 1686588 - 1687472 (-)
Gene ID: A111_contig_35_1507
Type: TC
Location: 1687489 - 1688379 (-)
Type: TC
Location: 1687489 - 1688379 (-)
Gene ID: A111_contig_35_1508
Type: STP
Location: 1688567 - 1689901 (-)
Type: STP
Location: 1688567 - 1689901 (-)
Gene ID: A111_contig_35_1509
Type: TF
Location: 1690234 - 1691067 (+)
Type: TF
Location: 1690234 - 1691067 (+)
Gene ID: A111_contig_35_1510
Type: CAZyme
Location: 1691178 - 1697048 (-)
Type: CAZyme
Location: 1691178 - 1697048 (-)
Gene ID: A111_contig_35_1511
Type: TF
Location: 1697379 - 1698308 (+)
Type: TF
Location: 1697379 - 1698308 (+)
Gene ID: A111_contig_35_1512
Type: CAZyme
Location: 1698413 - 1702174 (-)
Type: CAZyme
Location: 1698413 - 1702174 (-)
Gene ID: A111_contig_35_1513
Type: CAZyme
Location: 1702270 - 1705893 (-)
Type: CAZyme
Location: 1702270 - 1705893 (-)
Gene ID: A111_contig_35_1514
Type:
Location: 1705910 - 1706656 (-)
Type:
Location: 1705910 - 1706656 (-)
Gene ID: A111_contig_35_1515
Type: pfam
Location: 1706954 - 1708042 (+)
Type: pfam
Location: 1706954 - 1708042 (+)
Gene ID: A111_contig_35_1516
Type: CAZyme
Location: 1708132 - 1713252 (-)
Type: CAZyme
Location: 1708132 - 1713252 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter lactaris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.