Cluster: A111.bin_3_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A111.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A111_contig_35 | A111_contig_35_1453 | 1624241 | 1625800 | - | CBM50 |
| pfam | A111_contig_35 | A111_contig_35_1454 | 1625812 | 1626240 | - | PrcB_C |
| pfam | A111_contig_35 | A111_contig_35_1455 | 1626463 | 1627197 | + | Acyltransferase |
| TC | A111_contig_35 | A111_contig_35_1456 | 1627295 | 1629829 | - | 3.A.3.5.15 |
| pfam | A111_contig_35 | A111_contig_35_1457 | 1629932 | 1630243 | - | Trns_repr_metal |
| pfam | A111_contig_35 | A111_contig_35_1458 | 1630505 | 1630972 | - | LuxS |
| TC | A111_contig_35 | A111_contig_35_1459 | 1631034 | 1632023 | - | 8.A.5.1.3 |
| TC | A111_contig_35 | A111_contig_35_1460 | 1632765 | 1633706 | - | 2.A.19.5.2 |
| pfam | A111_contig_35 | A111_contig_35_1461 | 1633924 | 1634316 | - | Ribosomal_S9 |
| pfam | A111_contig_35 | A111_contig_35_1462 | 1634343 | 1634771 | - | Ribosomal_L13 |
| CAZyme | A111_contig_35 | A111_contig_35_1463 | 1635094 | 1636422 | + | GH13_20 |
Gene ID: A111_contig_35_1453
Type: CAZyme
Location: 1624241 - 1625800 (-)
Type: CAZyme
Location: 1624241 - 1625800 (-)
Gene ID: A111_contig_35_1454
Type: pfam
Location: 1625812 - 1626240 (-)
Type: pfam
Location: 1625812 - 1626240 (-)
Gene ID: A111_contig_35_1455
Type: pfam
Location: 1626463 - 1627197 (+)
Type: pfam
Location: 1626463 - 1627197 (+)
Gene ID: A111_contig_35_1456
Type: TC
Location: 1627295 - 1629829 (-)
Type: TC
Location: 1627295 - 1629829 (-)
Gene ID: A111_contig_35_1457
Type: pfam
Location: 1629932 - 1630243 (-)
Type: pfam
Location: 1629932 - 1630243 (-)
Gene ID: A111_contig_35_1458
Type: pfam
Location: 1630505 - 1630972 (-)
Type: pfam
Location: 1630505 - 1630972 (-)
Gene ID: A111_contig_35_1459
Type: TC
Location: 1631034 - 1632023 (-)
Type: TC
Location: 1631034 - 1632023 (-)
Gene ID: A111_contig_35_1460
Type: TC
Location: 1632765 - 1633706 (-)
Type: TC
Location: 1632765 - 1633706 (-)
Gene ID: A111_contig_35_1461
Type: pfam
Location: 1633924 - 1634316 (-)
Type: pfam
Location: 1633924 - 1634316 (-)
Gene ID: A111_contig_35_1462
Type: pfam
Location: 1634343 - 1634771 (-)
Type: pfam
Location: 1634343 - 1634771 (-)
Gene ID: A111_contig_35_1463
Type: CAZyme
Location: 1635094 - 1636422 (+)
Type: CAZyme
Location: 1635094 - 1636422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter lactaris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A111_contig_35_1455 | vegetarian > vegan | 1.05491 | 0.02445 |
| A111_contig_35_1458 | vegetarian > omnivore | 1.71283 | 0.01743 |
| A111_contig_35_1458 | vegetarian > vegan | 2.50642 | 0.02445 |