Cluster: A111.bin_36_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A111.bin_36
- CGC Family ID: CGCFAM_00057
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A111_contig_2780 | A111_contig_2780_80 | 79492 | 80364 | - | GH25 |
| pfam | A111_contig_2780 | A111_contig_2780_81 | 80481 | 81668 | - | Epimerase_2 |
| pfam | A111_contig_2780 | A111_contig_2780_82 | 81665 | 82879 | - | Epimerase | Polysacc_synt_C |
| TC | A111_contig_2780 | A111_contig_2780_83 | 84077 | 86650 | - | 3.A.9.1.2 |
| pfam | A111_contig_2780 | A111_contig_2780_84 | 86763 | 87887 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| CAZyme | A111_contig_2780 | A111_contig_2780_85 | 87905 | 89248 | - | CE4 |
| TC | A111_contig_2780 | A111_contig_2780_86 | 89214 | 91022 | - | 1.A.33.1.4 |
Gene ID: A111_contig_2780_80
Type: CAZyme
Location: 79492 - 80364 (-)
Type: CAZyme
Location: 79492 - 80364 (-)
Gene ID: A111_contig_2780_81
Type: pfam
Location: 80481 - 81668 (-)
Type: pfam
Location: 80481 - 81668 (-)
Gene ID: A111_contig_2780_82
Type: pfam
Location: 81665 - 82879 (-)
Type: pfam
Location: 81665 - 82879 (-)
Gene ID: A111_contig_2780_83
Type: TC
Location: 84077 - 86650 (-)
Type: TC
Location: 84077 - 86650 (-)
Gene ID: A111_contig_2780_84
Type: pfam
Location: 86763 - 87887 (-)
Type: pfam
Location: 86763 - 87887 (-)
Gene ID: A111_contig_2780_85
Type: CAZyme
Location: 87905 - 89248 (-)
Type: CAZyme
Location: 87905 - 89248 (-)
Gene ID: A111_contig_2780_86
Type: TC
Location: 89214 - 91022 (-)
Type: TC
Location: 89214 - 91022 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemania
Species
Holdemania massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.