Cluster: A103.bin_3_CGC41
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate: pectin
- Genome ID: A103.bin_3
- CGC Family ID: CGCFAM_01075
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_1100 | A103_contig_1100_1829 | 2310188 | 2311177 | + | GH5_2 |
| TC | A103_contig_1100 | A103_contig_1100_1830 | 2311215 | 2314451 | + | 1.B.14.6.1 |
| pfam | A103_contig_1100 | A103_contig_1100_1831 | 2314463 | 2316229 | + | SusD_RagB | SusD-like_3 |
| pfam | A103_contig_1100 | A103_contig_1100_1832 | 2316276 | 2317448 | + | TIG | SGBP_B_XBD |
| CAZyme | A103_contig_1100 | A103_contig_1100_1833 | 2317528 | 2318622 | + | GH5_5 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1834 | 2318631 | 2321201 | + | GH2 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1835 | 2321217 | 2322242 | + | GH5_5 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1836 | 2322250 | 2323605 | + | GH140 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1837 | 2323639 | 2324802 | + | GH130_1 |
| TC | A103_contig_1100 | A103_contig_1100_1838 | 2324809 | 2326224 | + | 2.A.2.3.6 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1839 | 2326242 | 2328899 | + | CBM67 | GH78 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1840 | 2328918 | 2330849 | + | CE20 | CE20 |
| sulfatase | A103_contig_1100 | A103_contig_1100_1841 | 2330923 | 2332464 | - | S1_16 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1842 | 2332631 | 2335216 | + | GH31_15 |
Gene ID: A103_contig_1100_1829
Type: CAZyme
Location: 2310188 - 2311177 (+)
Type: CAZyme
Location: 2310188 - 2311177 (+)
Gene ID: A103_contig_1100_1830
Type: TC
Location: 2311215 - 2314451 (+)
Type: TC
Location: 2311215 - 2314451 (+)
Gene ID: A103_contig_1100_1831
Type: pfam
Location: 2314463 - 2316229 (+)
Type: pfam
Location: 2314463 - 2316229 (+)
Gene ID: A103_contig_1100_1832
Type: pfam
Location: 2316276 - 2317448 (+)
Type: pfam
Location: 2316276 - 2317448 (+)
Gene ID: A103_contig_1100_1833
Type: CAZyme
Location: 2317528 - 2318622 (+)
Type: CAZyme
Location: 2317528 - 2318622 (+)
Gene ID: A103_contig_1100_1834
Type: CAZyme
Location: 2318631 - 2321201 (+)
Type: CAZyme
Location: 2318631 - 2321201 (+)
Gene ID: A103_contig_1100_1835
Type: CAZyme
Location: 2321217 - 2322242 (+)
Type: CAZyme
Location: 2321217 - 2322242 (+)
Gene ID: A103_contig_1100_1836
Type: CAZyme
Location: 2322250 - 2323605 (+)
Type: CAZyme
Location: 2322250 - 2323605 (+)
Gene ID: A103_contig_1100_1837
Type: CAZyme
Location: 2323639 - 2324802 (+)
Type: CAZyme
Location: 2323639 - 2324802 (+)
Gene ID: A103_contig_1100_1838
Type: TC
Location: 2324809 - 2326224 (+)
Type: TC
Location: 2324809 - 2326224 (+)
Gene ID: A103_contig_1100_1839
Type: CAZyme
Location: 2326242 - 2328899 (+)
Type: CAZyme
Location: 2326242 - 2328899 (+)
Gene ID: A103_contig_1100_1840
Type: CAZyme
Location: 2328918 - 2330849 (+)
Type: CAZyme
Location: 2328918 - 2330849 (+)
Gene ID: A103_contig_1100_1841
Type: sulfatase
Location: 2330923 - 2332464 (-)
Type: sulfatase
Location: 2330923 - 2332464 (-)
Gene ID: A103_contig_1100_1842
Type: CAZyme
Location: 2332631 - 2335216 (+)
Type: CAZyme
Location: 2332631 - 2335216 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella intestinihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.