Cluster: A103.bin_3_CGC40
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: A103.bin_3
- CGC Family ID: CGCFAM_01830
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_1100 | A103_contig_1100_1747 | 2195187 | 2197415 | - | GH3 |
| pfam | A103_contig_1100 | A103_contig_1100_1748 | 2197438 | 2199216 | - | DUF5040 | CBM96 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1749 | 2199244 | 2201460 | - | GH3 |
| pfam | A103_contig_1100 | A103_contig_1100_1750 | 2201504 | 2202901 | - | FAD_binding_2 | GIDA | DAO | Thi4 | Pyr_redox_2 | FAD_oxidored | NAD_binding_8 |
| CAZyme | A103_contig_1100 | A103_contig_1100_1751 | 2202928 | 2204061 | - | GH26 |
| pfam | A103_contig_1100 | A103_contig_1100_1752 | 2204109 | 2205785 | - | SusD_RagB | SusD-like_3 |
| TC | A103_contig_1100 | A103_contig_1100_1753 | 2205830 | 2209018 | - | 1.B.14.6.1 |
| TF | A103_contig_1100 | A103_contig_1100_1754 | 2209303 | 2213385 | + | HTH_AraC | HTH_AraC |
| CAZyme | A103_contig_1100 | A103_contig_1100_1755 | 2213551 | 2214387 | + | GH16_3 |
| NULL(UNKNOWN) | A103_contig_1100 | A103_contig_1100_1756 | 2214712 | 2215206 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A103_contig_1100 | A103_contig_1100_1757 | 2215219 | 2215677 | + | Por_Secre_tail |
| CAZyme | A103_contig_1100 | A103_contig_1100_1758 | 2215685 | 2216956 | + | GH16_3 |
| NULL(UNKNOWN) | A103_contig_1100 | A103_contig_1100_1759 | 2216988 | 2218610 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A103_contig_1100 | A103_contig_1100_1760 | 2218634 | 2220217 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A103_contig_1100 | A103_contig_1100_1761 | 2221100 | 2221792 | - | 2.A.122.1.1 |
| TC | A103_contig_1100 | A103_contig_1100_1762 | 2221789 | 2222130 | - | 1.E.14.1.4 |
| TC | A103_contig_1100 | A103_contig_1100_1763 | 2222191 | 2224101 | - | 2.A.16.2.2 |
Gene ID: A103_contig_1100_1747
Type: CAZyme
Location: 2195187 - 2197415 (-)
Type: CAZyme
Location: 2195187 - 2197415 (-)
Gene ID: A103_contig_1100_1748
Type: pfam
Location: 2197438 - 2199216 (-)
Type: pfam
Location: 2197438 - 2199216 (-)
Gene ID: A103_contig_1100_1749
Type: CAZyme
Location: 2199244 - 2201460 (-)
Type: CAZyme
Location: 2199244 - 2201460 (-)
Gene ID: A103_contig_1100_1750
Type: pfam
Location: 2201504 - 2202901 (-)
Type: pfam
Location: 2201504 - 2202901 (-)
Gene ID: A103_contig_1100_1751
Type: CAZyme
Location: 2202928 - 2204061 (-)
Type: CAZyme
Location: 2202928 - 2204061 (-)
Gene ID: A103_contig_1100_1752
Type: pfam
Location: 2204109 - 2205785 (-)
Type: pfam
Location: 2204109 - 2205785 (-)
Gene ID: A103_contig_1100_1753
Type: TC
Location: 2205830 - 2209018 (-)
Type: TC
Location: 2205830 - 2209018 (-)
Gene ID: A103_contig_1100_1754
Type: TF
Location: 2209303 - 2213385 (+)
Type: TF
Location: 2209303 - 2213385 (+)
Gene ID: A103_contig_1100_1755
Type: CAZyme
Location: 2213551 - 2214387 (+)
Type: CAZyme
Location: 2213551 - 2214387 (+)
Gene ID: A103_contig_1100_1756
Type:
Location: 2214712 - 2215206 (+)
Type:
Location: 2214712 - 2215206 (+)
Gene ID: A103_contig_1100_1757
Type: pfam
Location: 2215219 - 2215677 (+)
Type: pfam
Location: 2215219 - 2215677 (+)
Gene ID: A103_contig_1100_1758
Type: CAZyme
Location: 2215685 - 2216956 (+)
Type: CAZyme
Location: 2215685 - 2216956 (+)
Gene ID: A103_contig_1100_1759
Type:
Location: 2216988 - 2218610 (+)
Type:
Location: 2216988 - 2218610 (+)
Gene ID: A103_contig_1100_1760
Type:
Location: 2218634 - 2220217 (+)
Type:
Location: 2218634 - 2220217 (+)
Gene ID: A103_contig_1100_1761
Type: TC
Location: 2221100 - 2221792 (-)
Type: TC
Location: 2221100 - 2221792 (-)
Gene ID: A103_contig_1100_1762
Type: TC
Location: 2221789 - 2222130 (-)
Type: TC
Location: 2221789 - 2222130 (-)
Gene ID: A103_contig_1100_1763
Type: TC
Location: 2222191 - 2224101 (-)
Type: TC
Location: 2222191 - 2224101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella intestinihominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_1100_1748 | vegetarian > vegan | 1.55423 | 0.01096 |
| A103_contig_1100_1749 | vegetarian > vegan | 1.67261 | 0.00454 |
| A103_contig_1100_1750 | vegetarian > vegan | 1.29533 | 0.01077 |
| A103_contig_1100_1751 | vegetarian > vegan | 1.40914 | 0.01077 |
| A103_contig_1100_1752 | vegetarian > vegan | 1.43678 | 0.01077 |
| A103_contig_1100_1753 | vegetarian > vegan | 1.17174 | 0.01077 |
| A103_contig_1100_1754 | vegetarian > vegan | 1.26800 | 0.01077 |
| A103_contig_1100_1755 | vegetarian > vegan | 1.46136 | 0.01077 |
| A103_contig_1100_1756 | vegetarian > vegan | 1.51881 | 0.01077 |
| A103_contig_1100_1757 | vegetarian > vegan | 1.37541 | 0.01077 |
| A103_contig_1100_1758 | vegetarian > vegan | 1.47327 | 0.01077 |
| A103_contig_1100_1759 | vegetarian > vegan | 1.49772 | 0.01077 |
| A103_contig_1100_1760 | vegetarian > vegan | 1.21298 | 0.01077 |
| A103_contig_1100_1763 | vegetarian > vegan | 1.02387 | 0.01077 |