y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_169.45 |
Family | GH10 |
Protein Properties | Length: 505 Molecular Weight: 56571.6 Isoelectric Point: 7.4734 |
Chromosome | Chromosome/Scaffold: 169 Start: 436585 End: 438665 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 154 | 418 | 0 |
QKRLGFPFGCAVNQNILGNTAYQNWFSSRFTVTTFENEMKWASIESTRGIEDYSIPDAMLKFTKSHGIGVRGHNVLWEDPQYLPRWVDSLSTNDLKNAVT KRIYSIMRRYRGQVIGWDVVNENLHFSFFESKLGARASELFYAVAQMIDPTHTMFMNEFNTVEESRDSKATPSKYLEKLRSIKSSRSNTNLGIGLESHFG SGAPNLPYMRSAIDTLAATGLPIWLTEVDVQSGGDQAKYLEQILREGHSHPKVNGIVMWSAWSPQ |
Full Sequence |
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Protein Sequence Length: 505 Download |
MEHKISATNN FVVAHSRFQP FDSVSQTLHL ENDKLYTFSA WIQVSEGKTS VRAVFKTKSG 60 YKHAGSVVAK ANCWSMLKGG VTVDESGPAD LYFESNNTSV DIWVDSISLQ PFTQEEWKSH 120 QDESVNKMRK RKVRIQAVDT FGKPVANATV SVSQKRLGFP FGCAVNQNIL GNTAYQNWFS 180 SRFTVTTFEN EMKWASIEST RGIEDYSIPD AMLKFTKSHG IGVRGHNVLW EDPQYLPRWV 240 DSLSTNDLKN AVTKRIYSIM RRYRGQVIGW DVVNENLHFS FFESKLGARA SELFYAVAQM 300 IDPTHTMFMN EFNTVEESRD SKATPSKYLE KLRSIKSSRS NTNLGIGLES HFGSGAPNLP 360 YMRSAIDTLA ATGLPIWLTE VDVQSGGDQA KYLEQILREG HSHPKVNGIV MWSAWSPQGC 420 YRMCLTDNNF RNLATGDVVD KLLHEWGGRV EGKTDVNGFF EVSLFHGDYE VNLTPSTGLP 480 SSSSFKLAST DGEPHQTTLL VRNS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-30 | 183 | 405 | 232 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-52 | 159 | 412 | 271 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-74 | 192 | 439 | 270 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN10199.1 | 0 | 1 | 501 | 74 | 581 | endoxylanase [Carica papaya] |
EMBL | CAA19868.1 | 0 | 9 | 489 | 60 | 558 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_195112.2 | 0 | 9 | 489 | 75 | 560 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002313180.1 | 0 | 2 | 473 | 38 | 510 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532418.1 | 0 | 1 | 494 | 65 | 561 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 3e-33 | 161 | 412 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_B | 3e-27 | 146 | 412 | 1 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_A | 3e-27 | 146 | 412 | 1 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g3j_A | 3e-27 | 146 | 412 | 1 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g3i_A | 3e-27 | 146 | 412 | 1 | 266 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX266128 | 275 | 174 | 448 | 0 |
GR160803 | 255 | 9 | 263 | 0 |
GE471597 | 299 | 93 | 391 | 0 |
AM722845 | 268 | 125 | 390 | 0 |
EX266128 | 22 | 450 | 471 | 0.48 |
Sequence Alignments (This image is cropped. Click for full image.) |
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