y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00003316m |
Family | GH10 |
Protein Properties | Length: 372 Molecular Weight: 41644.9 Isoelectric Point: 5.066 |
Chromosome | Chromosome/Scaffold: 0318512 Start: 153 End: 1426 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 24 | 284 | 0 |
QTAKDFPIGSAIASTILGNQAYQKWFVDRFNAAVFEDELKWYSTEPTSGLLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPRWVKNLTSPDDLRAAV NARIQGLMTRYRGEFAHWDVNNEMLHYNFYEQRLGPNASMEFFSVAQDADPLATLFMNEYNVIETCDDPFSTVDTYAAKLRELRAGGAILEGIGLEGHFS RPNIPLMRAILDKLATLGLPIWFTEIDISSKFDAQTQAAYLEQVLREAYAHPAVSGVMLWT |
Full Sequence |
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Protein Sequence Length: 372 Download |
RVATIHVADP QGARVVGASV SVQQTAKDFP IGSAIASTIL GNQAYQKWFV DRFNAAVFED 60 ELKWYSTEPT SGLLRFDVPD QMLAFVRSHR VMVRGHNIFW ENQDATPRWV KNLTSPDDLR 120 AAVNARIQGL MTRYRGEFAH WDVNNEMLHY NFYEQRLGPN ASMEFFSVAQ DADPLATLFM 180 NEYNVIETCD DPFSTVDTYA AKLRELRAGG AILEGIGLEG HFSRPNIPLM RAILDKLATL 240 GLPIWFTEID ISSKFDAQTQ AAYLEQVLRE AYAHPAVSGV MLWTALHPSG CYQMCLTDWG 300 LNNLPTGDVV DRLLNEWRTL QAGGQTDAHG AYSFSGFLGE YILTVTYNNR TTQSTFSLSP 360 GDETRHINVQ M* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.001 | 305 | 371 | 74 | + Carboxypeptidase regulatory-like domain. | ||
COG3693 | XynA | 2.0e-33 | 13 | 283 | 289 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-56 | 26 | 283 | 273 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-70 | 62 | 310 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94920.1 | 0 | 1 | 371 | 194 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94922.1 | 0 | 1 | 371 | 101 | 470 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001049529.1 | 0 | 1 | 371 | 32 | 401 | Os03g0243700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001140909.1 | 0 | 1 | 371 | 191 | 560 | hypothetical protein LOC100272986 [Zea mays] |
RefSeq | XP_002468186.1 | 0 | 1 | 371 | 191 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3msg_B | 6e-29 | 26 | 252 | 13 | 245 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3msg_A | 6e-29 | 26 | 252 | 13 | 245 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3msd_B | 6e-29 | 26 | 252 | 13 | 245 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3msd_A | 6e-29 | 26 | 252 | 13 | 245 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 2q8x_B | 6e-29 | 26 | 252 | 13 | 245 | A Chain A, The High-resolution Crystal Structure Of Ixt6, A Thermophilic, Intracellular Xylanase From G. Stearothermophilus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV530577 | 252 | 44 | 295 | 0 |
FL769186 | 238 | 88 | 325 | 0 |
FL929887 | 227 | 1 | 227 | 0 |
CA245482 | 207 | 1 | 207 | 0 |
FL769186 | 26 | 322 | 347 | 0.0000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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