y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os05g23924.1 |
Family | GH10 |
Protein Properties | Length: 580 Molecular Weight: 64407.6 Isoelectric Point: 6.4515 |
Chromosome | Chromosome/Scaffold: 5 Start: 13755527 End: 13763435 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 229 | 510 | 0 |
ITRDFPFGSAISRTILGNKLYQEWFNKRFNAAVFENELKWYATEPYPGKEDYTVADQLLQFVQANDAVARGHNIFWEDPKYTPAWVKNLTGSQLRAAVSG RIESLLSRYKGDFVHWDVSNEMLHFDFYENRLGGNATVDFFDTAKRADPLATLFLNDFNVVEVCDDLSSSADSYVSRLRQLADGGVTFEGIGLEGHFGKP NIPYVRAVLDKLGTLRLPIWLTEIDISSSFDPKTQAAYLEEVLREGFAHPSVDGIMLWTAMDTNASCYQMCLTNQNFTNLPA |
Full Sequence |
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Protein Sequence Length: 580 Download |
MAIGKKHKEA AALSSSSSPL LPADRKALLL LLLLLIVLLA RPAASSDGVR YDYRAYTECK 60 SHPEPALYNG GILRWANKVT DFRTEDDGNY SPAFVLYNMS AATVYSFSCW VKIDGPTTAH 120 VKAKILTLAN AASQCLGTAL VRNDCWSFLK GGFTLNSASE TSVLYFQTAS PNASTISIRS 180 ASLQPFSPEQ WNQHREDRIQ LNRKRFVNVH VADSNGSRVV GAKVAVHQIT RDFPFGSAIS 240 RTILGNKLYQ EWFNKRFNAA VFENELKWYA TEPYPGKEDY TVADQLLQFV QANDAVARGH 300 NIFWEDPKYT PAWVKNLTGS QLRAAVSGRI ESLLSRYKGD FVHWDVSNEM LHFDFYENRL 360 GGNATVDFFD TAKRADPLAT LFLNDFNVVE VCDDLSSSAD SYVSRLRQLA DGGVTFEGIG 420 LEGHFGKPNI PYVRAVLDKL GTLRLPIWLT EIDISSSFDP KTQAAYLEEV LREGFAHPSV 480 DGIMLWTAMD TNASCYQMCL TNQNFTNLPA GDVVDKLLGE WQTKETLGTT NDRGSFNFSA 540 FLGEYKLSVT YLNLTAEGTF SLAHSDDTKH INIRLSPSC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-35 | 217 | 490 | 295 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-56 | 232 | 492 | 277 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-70 | 266 | 514 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005488 | binding |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC78941.1 | 0 | 74 | 579 | 21 | 526 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
GenBank | EEE63172.1 | 0 | 74 | 579 | 21 | 526 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
RefSeq | NP_001055145.1 | 0 | 110 | 579 | 11 | 480 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152556.1 | 0 | 47 | 577 | 36 | 567 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002446197.1 | 0 | 41 | 575 | 32 | 565 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2g4f_B | 1e-28 | 235 | 493 | 16 | 273 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
PDB | 2g4f_A | 1e-28 | 235 | 493 | 16 | 273 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
PDB | 2g3j_A | 1e-28 | 235 | 493 | 16 | 273 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
PDB | 2g3i_A | 1e-28 | 235 | 493 | 16 | 273 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
PDB | 1xyf_B | 4e-28 | 235 | 493 | 16 | 273 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |