PROTEIN: VatanenT_2016_SRR4305227_bin.9_k119_13679_52
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Protein File & Metadata
Source:
VatanenT_2016_SRR4305227_bin.9_k119_13679_52.pdb
Genome ID:
Protein ID:
VatanenT_2016_SRR4305227_bin.9_k119_13679_52
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Protein Sequence
MRKKIIGKSL LFIALLVVLL AALSPIFVYK TEHRAKLEEG LYLSDDQYDV VFMGSSHMNG 60 GLDPNVIWNQ QGISSFNYAT GGQSLDVTYY LLKEVLKTHK SPLVVVDLFY LGMTTQYGES 120 GLISNTVDNM RFSKNKLETI WNCVPPQDRI SYLLPVLKYH FRWSSLQEKD FGFDVASLYY 180 SKGFAAGTNR YGKPNSEWKS TDNRIDIPEK SLEYLNKIID LSKAENFNLI FINMPCDYSE 240 AEKESDWVND CEALFNTVAD VAQKNGIPFL DFYDKKDEVG LDFANDMNNA GHLNLWGAYK 300 ISSYFGNYLA ENYNLEDHRS DSAYAQWDKD YQYSQAASVT 340
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-O25527-F1-model_v4 | 8 | 312 | 9 | 337 | 0.5662 |
0.6655 |
| AF-Q2FZW3-F1-model_v4 | 15 | 315 | 17 | 383 | 0.5193 |
0.6367 |
| AF-A0A132P6N8-F1-model_v4 | 19 | 316 | 20 | 393 | 0.5099 |
0.6483 |
Structural Homologs - CAZyme3D-Whole
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A3G8RBC6 | GT4 | 16 | 311 | 677 | 971 | 0.4245 |
0.717 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 6pfx-assembly1.cif.gz_A | 31 | 314 | 12 | 359 | 0.5179 |
0.6623 |
| 6pfx-assembly2.cif.gz_B | 31 | 314 | 11 | 357 | 0.5174 |
0.6601 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P39578-F1-model_v4 | 15 | 314 | 13 | 388 | 0.5253 |
0.6464 |
| AF-Q2FZW3-F1-model_v4 | 15 | 315 | 17 | 383 | 0.5193 |
0.6367 |