PROTEIN: ShaoY_2019_ERR3405831_bin.2_k141_4807_3
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Protein File & Metadata
Source:
ShaoY_2019_ERR3405831_bin.2_k141_4807_3.pdb
Genome ID:
Protein ID:
ShaoY_2019_ERR3405831_bin.2_k141_4807_3
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Protein Sequence
MTDYYFDTDM KKEVLENYLS RAVTAAGLLE SSTLEDDLRA IGELGVKFLG RASGVWYMTM 60 DEEEHFEKSR ELAEKVHAVD EDIILQSCIF EIIVEKINEI PIPEYVFEAF GVKPEKRNFC 120 LEKALFPQKP PGFIHTSDEK EKNGGIPDLN RLEARMWFFY RASRYIDCGY EALHMGQVHL 180 YTANDRGFLK TEELFYLIRD YGKKHARRHK VLLDAHTHGI NIRGRLLFDY HAMPFTGVPL 240 LEHPGHKQVL VREGFSEGGS NPNGWSAQAM PYLMEYDNWG GKVIDRFDAY TREELAKKDW 300 WGYDQIGWFA NQDEATRNHF LEYTYYWTEV QNPNAYFEVP FLRMLSDAAL VAKREDGTIG 360 IQEFYQINDK SKGCPMGFSQ EGTLRRLWSM NHMLRQKAAN PGNLMDYGAR EEYDEETGVK 420 LPEKVVVYGS FQPFVGAVKN DSNSEVTRMY YLGGGLYALT VVIPYAGTYD YAVSTYGTLS 480 ATYCYDCFPR SGSSNKASLV TERDNTVVRF TYRFSDHRVS AEIVEAETNS CRSISE 536
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-A0A1D6FPT2-F1-model_v4 | 1 | 533 | 23 | 737 | 0.4272 |
0.5248 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A7Z2VP05-F1-model_v4 | CBM23 | 1 | 536 | 29 | 757 | 0.5774 |
0.722 |
| AF-M1MWA6-F1-model_v4 | GH13 | 11 | 528 | 1 | 403 | 0.5756 |
0.6723 |
| AF-A0A7H0JZ08-F1-model_v4 | GH13 | 14 | 528 | 1 | 381 | 0.5752 |
0.6887 |
| AF-A0A3Q9G3Q8-F1-model_v4 | GH13 | 9 | 528 | 1 | 393 | 0.5698 |
0.6758 |
| AF-A0A344UVR1-F1-model_v4 | GH13 | 9 | 528 | 6 | 417 | 0.567 |
0.6616 |
| AF-A0A7L9SWL0-F1-model_v4 | GH13 | 9 | 529 | 9 | 432 | 0.5623 |
0.6505 |
| AF-A0A2K9BEW5-F1-model_v4 | GH13 | 9 | 528 | 8 | 430 | 0.5613 |
0.6478 |
| AF-A0A5P8M844-F1-model_v4 | GH27 | 8 | 526 | 4 | 413 | 0.5551 |
0.6458 |
| AF-A0A1B3Z7P8-F1-model_v4 | GH27 | 8 | 527 | 28 | 442 | 0.5376 |
0.6404 |
| AF-A0A0U2UQI9-F1-model_v4 | GH13_36 | 12 | 527 | 74 | 564 | 0.5207 |
0.5949 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A7Z2VP05 | CBM23 | 1 | 536 | 29 | 757 | 0.5774 |
0.722 |
| A0A3Q9G3Q8 | GH13 | 9 | 528 | 1 | 393 | 0.5698 |
0.6758 |
| A0A8J2V362 | GH168 | 5 | 531 | 21 | 384 | 0.5609 |
0.6977 |
| A0A060R749 | GH13 | 9 | 527 | 13 | 434 | 0.5565 |
0.6457 |
| A0A2S1LUN2 | GH13 | 9 | 529 | 45 | 468 | 0.5418 |
0.6474 |
| BDO42930.1 | GH13_20 | 9 | 527 | 15 | 468 | 0.5399 |
0.6105 |
| A0A068NQ53 | GH36 | 10 | 520 | 120 | 518 | 0.5121 |
0.6724 |
| I0HZS7 | GH13_20 | 8 | 529 | 155 | 595 | 0.4847 |
0.6185 |
| A0A172TFF4 | GH36 | 10 | 523 | 272 | 677 | 0.4597 |
0.6651 |
| G8P1V5 | CBM35 , GH27 | 6 | 525 | 50 | 833 | 0.4382 |
0.5558 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 4nzf-assembly1.cif.gz_A | 8 | 526 | 3 | 427 | 0.5476 |
0.6294 |
| 1jf6-assembly1.cif.gz_B | 10 | 527 | 123 | 581 | 0.4954 |
0.6068 |
| 1jf5-assembly1.cif.gz_A | 10 | 528 | 123 | 582 | 0.4951 |
0.6059 |
| 1wzl-assembly1.cif.gz_A | 10 | 528 | 123 | 582 | 0.4946 |
0.6057 |
| 1wzm-assembly1.cif.gz_A | 10 | 527 | 123 | 581 | 0.4945 |
0.6066 |
| 1j0i-assembly1.cif.gz_B | 10 | 526 | 127 | 585 | 0.4941 |
0.6077 |
| 3a23-assembly2.cif.gz_B | 11 | 519 | 4 | 528 | 0.4281 |
0.4892 |
Structural Homologs - SwissProt
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.