PROTEIN: Rep_556_c_99_16
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Protein File & Metadata
Source:
Rep_556_c_99_16.pdb
Genome ID:
Protein ID:
Rep_556_c_99_16
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Protein Sequence
MYRNYKVVCV TPAGRRRYMQ YLIPQVLSSD LVDRYDIWIN TMNKEDILFF KLLSEKCNKI 60 HLVYQPDNLI NGNLSINAFW RLCSEKDAIY IRLDDDIVWL ESDFFQKILQ FRVDNPNYFM 120 IAPLVINNSL STYLLQVCKK IKLNKYYSAS CMHPTLWKDP RFALQLHEWF FNGYLKTNKY 180 ESLYCGSHTI AMNRFSINSL CWFGNQIDQI GNVNGDEEEY ISVKRPSELG LCNCIVGDVL 240 ISHFAFFTQR KMLDSAHILE KYGDYLHDKW QKNESSIYLE RIMQNTIQYV TDHPEEVEKL 300 DIPYKKCQSK SLISRIINKI MNKMSFFSSS KFILE 335
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-C0NZA9-F1-model_v4 | 1 | 281 | 69 | 411 | 0.6729 |
0.8975 |
| AF-C0NWW0-F1-model_v4 | 1 | 284 | 79 | 425 | 0.6703 |
0.8876 |
| AF-C1H7H9-F1-model_v4 | 1 | 284 | 93 | 435 | 0.6646 |
0.8886 |
| AF-C1HDV8-F1-model_v4 | 1 | 282 | 71 | 414 | 0.6617 |
0.8926 |
| AF-A0A1C1CRS5-F1-model_v4 | 1 | 279 | 115 | 462 | 0.6476 |
0.9031 |
| AF-C1HAE4-F1-model_v4 | 1 | 275 | 82 | 461 | 0.6407 |
0.908 |
| AF-K0F8C8-F1-model_v4 | 1 | 315 | 4 | 284 | 0.5928 |
0.6625 |
| AF-A0A133CI93-F1-model_v4 | 1 | 319 | 3 | 252 | 0.5912 |
0.7125 |
| AF-Q48215-F1-model_v4 | 5 | 335 | 1 | 267 | 0.573 |
0.6551 |
| AF-Q9HZM5-F1-model_v4 | 2 | 265 | 1 | 254 | 0.5659 |
0.6597 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A7D6V9C3 | GT2 | 1 | 315 | 3 | 282 | 0.5924 |
0.6624 |
| AF-A0A7D6V9C3-F1-model_v4 | GT2 | 1 | 315 | 3 | 282 | 0.5924 |
0.6624 |
| AF-A0A2Z4BVJ7-F1-model_v4 | GT2 | 1 | 334 | 1 | 270 | 0.5916 |
0.6724 |
| AF-A0A4P6WLT4-F1-model_v4 | GT2 | 1 | 334 | 1 | 270 | 0.5914 |
0.672 |
| AF-Q5E8H6-F1-model_v4 | GT2 | 1 | 334 | 1 | 270 | 0.5913 |
0.6714 |
| A0A399RNW7 | GT2 | 3 | 326 | 1 | 272 | 0.5898 |
0.6684 |
| AF-A0A6G9YSQ1-F1-model_v4 | GT2 | 1 | 315 | 4 | 283 | 0.5886 |
0.6588 |
| AF-A0A385JMA9-F1-model_v4 | GT2 | 1 | 334 | 6 | 278 | 0.5864 |
0.6697 |
| AF-A0A075X059-F1-model_v4 | GT2 | 1 | 329 | 1 | 280 | 0.5862 |
0.6776 |
| AF-A0A385PXR3-F1-model_v4 | GT2 | 5 | 328 | 1 | 292 | 0.5862 |
0.6424 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A2V4F1C2 | GT2 | 1 | 335 | 1 | 268 | 0.6012 |
0.6899 |
| BCM89438.1 | GT2 | 2 | 274 | 1 | 290 | 0.5989 |
0.6991 |
| Q697D6 | GT2 | 1 | 334 | 1 | 268 | 0.5949 |
0.6797 |
| A0A7D6V9C3 | GT2 | 1 | 315 | 3 | 282 | 0.5924 |
0.6624 |
| QRQ97185.1 | GT2 | 1 | 243 | 1 | 228 | 0.591 |
0.7172 |
| A0A399RNW7 | GT2 | 3 | 326 | 1 | 272 | 0.5898 |
0.6684 |
| A0A3B7CPK2 | GT2 | 1 | 335 | 1 | 271 | 0.5882 |
0.6671 |
| Q9K6L5 | GT2 | 1 | 335 | 1 | 265 | 0.5874 |
0.6792 |
| A0A6M3XPT8 | GT2 | 1 | 321 | 2 | 245 | 0.5868 |
0.7324 |
| A0A385JMA9 | GT2 | 1 | 334 | 6 | 278 | 0.5864 |
0.6697 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 1gq9-assembly1.cif.gz_B | 5 | 268 | 1 | 241 | 0.5759 |
0.6864 |
| 3pol-assembly1.cif.gz_A | 3 | 276 | 7 | 262 | 0.5607 |
0.6596 |
| 1vic-assembly3.cif.gz_B | 2 | 269 | 1 | 248 | 0.5586 |
0.6583 |
| 4xwi-assembly1.cif.gz_A | 3 | 268 | 1 | 252 | 0.5535 |
0.6485 |
| 3jtj-assembly1.cif.gz_A-2 | 2 | 269 | 1 | 249 | 0.5505 |
0.6486 |
| 1vic-assembly1.cif.gz_A | 2 | 272 | 1 | 255 | 0.5491 |
0.6418 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q46635-F1-model_v4 | 6 | 335 | 1 | 266 | 0.5882 |
0.6726 |
| AF-Q03084-F1-model_v4 | 1 | 335 | 1 | 272 | 0.5866 |
0.6685 |
| AF-A0LE62-F1-model_v4 | 5 | 270 | 1 | 250 | 0.582 |
0.6828 |
| AF-P42216-F1-model_v4 | 3 | 271 | 1 | 246 | 0.5804 |
0.686 |
| AF-Q7VR47-F1-model_v4 | 2 | 268 | 1 | 258 | 0.5797 |
0.6709 |
| AF-O32268-F1-model_v4 | 1 | 334 | 2 | 252 | 0.5738 |
0.6724 |
| AF-Q04VK9-F1-model_v4 | 4 | 269 | 1 | 245 | 0.5737 |
0.6804 |
| AF-Q04XW6-F1-model_v4 | 4 | 269 | 1 | 245 | 0.5732 |
0.6806 |
| AF-Q72UN2-F1-model_v4 | 3 | 269 | 1 | 246 | 0.5731 |
0.6808 |
| AF-Q48215-F1-model_v4 | 5 | 335 | 1 | 267 | 0.573 |
0.6551 |