PROTEIN: Rep_3394_c_53_7
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Protein File & Metadata
Source:
Rep_3394_c_53_7.pdb
Genome ID:
Protein ID:
Rep_3394_c_53_7
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Protein Sequence
MKRTLALLLT LALVISCVFA VQAFTPPESY VHHYARTSET LSPVIEGETY HFPVKQGDFF 60 FYFNRMQEDA AYRDAHFDWL RMFRVLKTNG YYTMPRYSAK ETKKSDGRTF FYISLNGFYD 120 YEAYSAQFGT PPEGVIYGVT VGDYGNYILQ TDVSGEYLPA SYPDGVWRYE ALESHPEWFI 180 NPQTPVGGLY SGDCGGYYGG PAYFFNFDEE ELEAFTDYMA SVILKYARKT GYTGLFFDYC 240 SAGLDGSFVP GRILDLFQSK YGLSSRAQAV EKYNELAGAF LSLLRSKLPE EFEIFANQSL 300 YAHEDYYENV DYDLVESYFT SYTYGRLPRT IQVKGKDGNV SAISTSQTFF RPWTSDKADS 360 DYDWVKNGSG ISDFLSVPAP ALAAIKADPE NSPSFYFLDY MIPKYVVCGE DEAGNPIYEA 420 QTDRNAIYYS YAGSKLLGCS GSNSDWYGGE GEYDQDDLYF VDLGAPVGDD YALKKWDGTA 480 ATGDEQADYV IRYYENGFVL LTTGKITEPT KITVPKDGTS GKRGIYDLYE TNFIKNASGD 540 HAITLQPELY EMYAGYVNPA DENDIDDGYR PLGRVFLYVD 580
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A6G7VDH4-F1-model_v4 | GH13 | 57 | 580 | 1 | 423 | 0.5722 |
0.6723 |
| AF-A0A6I6E507-F1-model_v4 | GH13 | 57 | 580 | 1 | 422 | 0.5717 |
0.6725 |
| AF-A0A4P9URC3-F1-model_v4 | GH13 | 57 | 580 | 1 | 421 | 0.5706 |
0.6741 |
| AF-I3YDT1-F1-model_v4 | GH13 | 57 | 580 | 1 | 426 | 0.5661 |
0.6706 |
| AF-A0A385MWD1-F1-model_v4 | GH13 | 55 | 580 | 20 | 435 | 0.5652 |
0.6835 |
| AF-A0A2Z3GIZ0-F1-model_v4 | GH13 | 55 | 580 | 19 | 449 | 0.565 |
0.6715 |
| AF-A0A5B7YBZ6-F1-model_v4 | GH13 | 55 | 580 | 21 | 437 | 0.5624 |
0.6833 |
| AF-A0A857ACK8-F1-model_v4 | GH66 | 25 | 579 | 15 | 522 | 0.5608 |
0.6197 |
| AF-A0A1S7BEL3-F1-model_v4 | GH27 | 59 | 580 | 1 | 409 | 0.5604 |
0.6687 |
| AF-A0A6M8SAV5-F1-model_v4 | GH13 | 19 | 578 | 17 | 452 | 0.5592 |
0.6608 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| BDU50715.1 | GH13 | 55 | 580 | 3 | 421 | 0.5714 |
0.6759 |
| WDE98873.1 | GH168 | 53 | 578 | 46 | 398 | 0.567 |
0.759 |
| F9U6X3 | GH13 | 57 | 580 | 1 | 421 | 0.5589 |
0.6743 |
| A0A060R749 | GH13 | 55 | 580 | 20 | 434 | 0.5555 |
0.6723 |
| APR80524.1 | GH13 | 57 | 580 | 1 | 463 | 0.5532 |
0.6281 |
| A0A6J4BXU6 | GH13 | 55 | 580 | 42 | 458 | 0.5527 |
0.6837 |
| A0A517YVC6 | GH13 | 20 | 580 | 20 | 479 | 0.5492 |
0.6369 |
| A0A7H0VIT0 | GH13 | 55 | 580 | 47 | 456 | 0.5484 |
0.6872 |
| A0A8J8SCS4 | GH66 | 25 | 580 | 23 | 558 | 0.5477 |
0.5953 |
| A0A2S1LUN2 | GH13 | 55 | 580 | 51 | 468 | 0.5466 |
0.6825 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 4gkl-assembly2.cif.gz_B | 55 | 580 | 3 | 418 | 0.5641 |
0.6701 |
| 8iu8-assembly1.cif.gz_A | 24 | 580 | 14 | 546 | 0.5613 |
0.6058 |
| 8iu9-assembly1.cif.gz_A | 24 | 580 | 15 | 548 | 0.5584 |
0.6031 |
| 8iua-assembly1.cif.gz_A | 24 | 580 | 21 | 555 | 0.5556 |
0.6026 |
| 6sav-assembly2.cif.gz_B | 55 | 580 | 7 | 438 | 0.5518 |
0.6483 |
| 6sau-assembly1.cif.gz_A | 55 | 578 | 7 | 441 | 0.5515 |
0.646 |
| 4nzf-assembly1.cif.gz_A | 55 | 580 | 10 | 431 | 0.5481 |
0.6527 |
| 4nx0-assembly1.cif.gz_D | 55 | 580 | 10 | 429 | 0.5455 |
0.6554 |
| 5axg-assembly1.cif.gz_B | 24 | 579 | 28 | 582 | 0.5405 |
0.58 |
| 3vm7-assembly1.cif.gz_A | 55 | 580 | 7 | 461 | 0.5383 |
0.6252 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-O06988-F1-model_v4 | 55 | 580 | 134 | 587 | 0.4865 |
0.6245 |
| AF-Q9R9H8-F1-model_v4 | 55 | 580 | 133 | 587 | 0.471 |
0.6036 |
| AF-Q44052-F1-model_v4 | 55 | 580 | 60 | 494 | 0.4633 |
0.6381 |
| AF-L8B068-F1-model_v4 | 56 | 579 | 247 | 657 | 0.4275 |
0.6251 |