PROTEIN: Rep_3394_c_1_8
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Protein File & Metadata
Source:
Rep_3394_c_1_8.pdb
Genome ID:
Protein ID:
Rep_3394_c_1_8
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Protein Sequence
MREEGREAQY RRIWSRSPRM ARALEASLPP EEDTLALVGS YVLAPALGSF VQWLLQEAVK 60 SGIRRLYFLA RDGYFPYRAA LIFCEKRRLP MECRYLSCSR YSLRLPLFHL DREEALDYVC 120 RGGIDVTMDK ILSRAGLTEE EKREVFRRLS LSFLPEEVLP HAELPEIRRR LGACGAFLSY 180 MDGHSRAALP GLTGYLRQEG LLDDFPDAVV DSGWVGSVQK SLRDALARMG RTRPLAGYYW 240 GLYELPSGVS REEYHTYYFA PEGDLGAKLR FNNCLFEAVY TAPHGMTLSY RREGERFVPR 300 YGRIGEEKKA FVERLEEYLL SYIRRLADTE EKLPDADAVR EDRRVVRDLL GRFMGRPSRK 360 EAELFGSLPF SDDVLEGKER PIAAPLTGEE LDAHRLLPKL ALMAGLRKGS LRESAWHEGS 420 VVRSGRRVRR RLRQYRLYQA ARQLRKMLRF RKERGRKDER RTTA 464
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q8ZQU8-F1-model_v4 | 11 | 433 | 207 | 631 | 0.6478 |
0.8225 |
| AF-Q0P8I2-F1-model_v4 | 1 | 444 | 554 | 976 | 0.4673 |
0.7045 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-W0DNV7-F1-model_v4 | GT2 | 1 | 449 | 295 | 1091 | 0.5746 |
0.834 |
| A0A1I7GMF6 | GT2 | 11 | 444 | 633 | 1083 | 0.5714 |
0.8544 |
| A0A974WXG9 | GT4 | 1 | 438 | 183 | 1076 | 0.5706 |
0.8496 |
| AF-A0A2I6S8V6-F1-model_v4 | GT2 | 11 | 448 | 617 | 1067 | 0.5704 |
0.8416 |
| AF-A0A0U5F758-F1-model_v4 | GT2 | 30 | 441 | 8 | 403 | 0.5554 |
0.7665 |
| A0A9J7AXY3 | GT2 | 30 | 448 | 6 | 400 | 0.5449 |
0.7895 |
| V4JBH5 | GT2 | 29 | 443 | 1 | 397 | 0.5409 |
0.79 |
| AF-A0A0H3KC95-F1-model_v4 | GT2 | 27 | 441 | 6 | 405 | 0.538 |
0.7926 |
| QRK05458.1 | GT4 | 13 | 459 | 249 | 995 | 0.532 |
0.7931 |
| AF-A0A1D7XMN6-F1-model_v4 | GT2 | 1 | 442 | 552 | 969 | 0.5239 |
0.7996 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A1I7GMF6 | GT2 | 11 | 444 | 633 | 1083 | 0.5714 |
0.8544 |
| A0A974WXG9 | GT4 | 1 | 438 | 183 | 1076 | 0.5706 |
0.8496 |
| A0A2I6S8V6 | GT2 | 11 | 448 | 617 | 1067 | 0.5704 |
0.8416 |
| A0A0U5F758 | GT2 | 30 | 441 | 8 | 403 | 0.5554 |
0.7665 |
| A0A9J7AXY3 | GT2 | 30 | 448 | 6 | 400 | 0.5449 |
0.7895 |
| V4JBH5 | GT2 | 29 | 443 | 1 | 397 | 0.5409 |
0.79 |
| A0A0H3KC95 | GT2 | 27 | 441 | 6 | 405 | 0.538 |
0.7926 |
| QRK05458.1 | GT4 | 13 | 459 | 249 | 995 | 0.532 |
0.7931 |
| W8KPG0 | GT2 | 1 | 443 | 1 | 399 | 0.5235 |
0.7837 |
| A6M2M4 | GT2 | 6 | 455 | 212 | 917 | 0.5226 |
0.8046 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 7shg-assembly1.cif.gz_A | 15 | 368 | 241 | 591 | 0.5706 |
0.8375 |
| 8a0m-assembly1.cif.gz_B | 5 | 437 | 458 | 876 | 0.5362 |
0.7983 |
| 8a0m-assembly2.cif.gz_C | 4 | 437 | 591 | 1024 | 0.5318 |
0.8006 |
| 8a0m-assembly1.cif.gz_A | 4 | 437 | 590 | 1023 | 0.5311 |
0.7991 |
| 8a0c-assembly1.cif.gz_A | 4 | 439 | 595 | 1027 | 0.5308 |
0.8009 |
| 8a0c-assembly1.cif.gz_B | 5 | 437 | 596 | 1025 | 0.5229 |
0.7937 |
| 8a0m-assembly2.cif.gz_D | 5 | 437 | 487 | 887 | 0.5064 |
0.7872 |
Structural Homologs - SwissProt
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.