PROTEIN: HMPREF9447_RS12420
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Protein File & Metadata
Source:
HMPREF9447_RS12420.pdb
Genome ID:
Protein ID:
HMPREF9447_RS12420
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Protein Sequence
MNIFHRKSLL ATCLAVMMTL PGYAQKNEES PQLSVYFSPA TTGVMSPDSE GFIQRWLLLE 60 PIDKPNRSNT VFTDSYIREA FATEYFPGQF TVLPKDGDKV RVGKQKLTWH ALESKLFNVK 120 LFRFASGLKK QVYGVLFWAV TVIECPEDME NVRMSVGSNS ASMWWLNGEE AVILSGDRRM 180 VKDDCLSRRL TLKKGKNIVR GALINGPGMS DFCVRFLDEN GTPVKNITIS YK 232
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q76KP1-F1-model_v4 | 41 | 232 | 115 | 282 | 0.3261 |
0.722 |
| AF-Q766D5-F1-model_v4 | 12 | 232 | 20 | 283 | 0.3237 |
0.5602 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-D7SFH3-F1-model_v4 | GH43_2 | 15 | 232 | 356 | 697 | 0.5886 |
0.9446 |
| UPS44903.1 | CBM6 , GH43_2 | 17 | 232 | 431 | 701 | 0.5843 |
0.9475 |
| AF-D5EXY9-F1-model_v4 | CBM6 , GH43_2 | 19 | 232 | 393 | 700 | 0.5804 |
0.9492 |
| AF-A0A7G9XVI1-F1-model_v4 | GH43_2 , GH8 | 8 | 232 | 391 | 1048 | 0.544 |
0.9237 |
| AF-A0A068NPW6-F1-model_v4 | GH0 | 40 | 232 | 21 | 214 | 0.4628 |
0.8529 |
| AF-A0A2S0KVC0-F1-model_v4 | GH0 | 40 | 232 | 68 | 277 | 0.4283 |
0.8667 |
| AF-A0A402CZV5-F1-model_v4 | GH4 | 46 | 221 | 457 | 622 | 0.4254 |
0.8557 |
| AF-A0A344TID5-F1-model_v4 | GH163 | 40 | 222 | 22 | 202 | 0.4235 |
0.8472 |
| AF-A0A518BU48-F1-model_v4 | GH31 | 6 | 232 | 60 | 1031 | 0.4189 |
0.7273 |
| A0A380YJ87 | GH20 | 40 | 232 | 397 | 837 | 0.4095 |
0.7701 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| D7SFH3 | GH43_2 | 15 | 232 | 356 | 697 | 0.5886 |
0.9446 |
| UPS44903.1 | CBM6 , GH43_2 | 17 | 232 | 431 | 701 | 0.5843 |
0.9475 |
| A0A7G9XVI1 | GH43_2 , GH8 | 8 | 232 | 391 | 1048 | 0.544 |
0.9237 |
| A0A402CZV5 | GH4 | 46 | 221 | 457 | 622 | 0.4254 |
0.8557 |
| A0A344TID5 | GH163 | 40 | 222 | 22 | 202 | 0.4235 |
0.8472 |
| A0A518BU48 | GH31 | 6 | 232 | 60 | 1031 | 0.4189 |
0.7273 |
| A0A380YJ87 | GH20 | 40 | 232 | 397 | 837 | 0.4095 |
0.7701 |
| A0A518LMX6 | GH31 | 43 | 232 | 945 | 1147 | 0.3997 |
0.8126 |
| BCM93550.1 | GH2 | 40 | 232 | 948 | 1135 | 0.3988 |
0.8153 |
| A0A1H1SHM5 | GH2 | 41 | 232 | 945 | 1132 | 0.395 |
0.8052 |
Structural Homologs - PDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q76KP1-F1-model_v4 | 41 | 232 | 115 | 282 | 0.3261 |
0.722 |
| AF-Q766D5-F1-model_v4 | 12 | 232 | 20 | 283 | 0.3237 |
0.5602 |