dbCAN Logo

PROTEIN: HRGMv2_4245_15_56

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_4245_15_56.pdb
Genome ID:
HRGMv2_4245
Protein ID:
HRGMv2_4245_15_56

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MNKIRDNPAI   ETLFFMTYFL   FQSITYREAR   KVGKIEEGKK   GFLSGEKKYL   KDLNIAVICD 60
ELTYVNFSRE   CHLYALTPNN   WKQVLEDYQI   DLFLCESAWE   GRKRDHQCWR   GRIYKNHFVK 120
FETRKVLFDI   LDACRKRKIP   TVFWNKEDPT   YFGNPRYDFV   DTALHFQYIF   TTAQECVKKY 180
QELGHKQTNV   LMFGFSPDFY   NPKGSGIKEK   KAVFAGSWFG   EDKGRCAMES   ALFDKVINEN 240
IPLEIYDRQS   GSRKKNRQYP   QKYQRFVHQA   VGQEALGEIV   KKSLYALNIN   TVMCSETMFA 300
RRVYELMASN   VYIISGASSA   MSKWLKGRYS   QVGDPLPHNV   EEICRDNVNY   VFQNHTNKQR 360
LTDMLNKIGY   PVKQEKISVA   VCSSKYDYGC   YQEGKISVYT   VKSMDEISTD   FQYFIIWENE 420
KLPQLEKMAV   HFDYLTEDCG   VRISKNHFYQ   TVEDDDNVGV   LFPVGMLKLI   HSGTAVKTKK 480
YQI 483
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-K0EWM5-F1-model_v4 53 369 1 334 0.6085 0.7653
AF-K0EV23-F1-model_v4 53 369 1 334 0.6078 0.7641
AF-Q9HW90-F1-model_v4 53 374 1 365 0.5642 0.7382
AF-A0A1A7SPW8-F1-model_v4 45 372 1 378 0.5642 0.7328
AF-G3XD85-F1-model_v4 41 373 1 368 0.5635 0.7173
AF-O07147-F1-model_v4 52 372 1 364 0.5612 0.7393
AF-A4SH27-F1-model_v4 41 372 1 377 0.5594 0.7182
AF-K0F3N9-F1-model_v4 52 372 1 364 0.5582 0.7353
AF-P9WMZ5-F1-model_v4 52 373 1 369 0.5569 0.7343
AF-Q8DPV9-F1-model_v4 44 372 28 369 0.5559 0.7166
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
WDV46860.1 GT2 44 483 1 523 0.7579 0.9031
QZY57027.1 GT2 43 483 7 529 0.7494 0.8953
AF-E1VVH3-F1-model_v4 GT0 49 483 9 538 0.741 0.9023
UNK47341.1 GT0 47 483 2 529 0.7281 0.8771
AF-C7NGW1-F1-model_v4 GT0 48 483 70 586 0.7108 0.894
AF-A0A5Q0DQJ3-F1-model_v4 GT2 40 483 67 596 0.7072 0.8803
UZD45471.1 GT0 20 483 128 698 0.7066 0.8841
AF-A0A078MSR9-F1-model_v4 GT2 48 483 69 594 0.7059 0.891
AF-E6SDU0-F1-model_v4 GT0 21 483 39 584 0.7059 0.8371
J2ZNA2 GT0 49 483 72 598 0.7044 0.895
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
WDV46860.1 GT2 44 483 1 523 0.7579 0.9031
QZY57027.1 GT2 43 483 7 529 0.7494 0.8953
A0A2K9MI69 GT2 41 483 52 595 0.7026 0.8753
W0BAJ4 GT2 58 465 1 484 0.685 0.8185
D6Y2T0 GT2 48 483 136 652 0.6828 0.8935
Q2NHK1 GT2 40 483 363 862 0.6796 0.9488
W0EC73 GT2 9 483 42 671 0.6745 0.8231
ULB45234.1 GT0 , GT2 1 483 1 752 0.6711 0.8396
A0A2S0MS45 GT2 21 483 25 581 0.6643 0.7873
A0A9Q2QFT7 GT2 17 483 40 795 0.649 0.8537
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
2jjm-assembly1.cif.gz_B 48 372 1 359 0.5907 0.7543
3mbo-assembly3.cif.gz_E 48 372 1 372 0.5809 0.7578
3mbo-assembly3.cif.gz_F 46 372 1 366 0.5756 0.7405
3mbo-assembly4.cif.gz_G 44 372 1 362 0.5742 0.7308
2gek-assembly1.cif.gz_A 53 372 1 352 0.5705 0.7402
7qsg-assembly1.cif.gz_A 46 372 1 376 0.5536 0.7217
8p1x-assembly1.cif.gz_AAA 44 370 1 492 0.4936 0.7263
4pqg-assembly1.cif.gz_A 38 373 1 505 0.4823 0.6995
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-P42090-F1-model_v4 48 371 1 316 0.6254 0.7678
AF-O31681-F1-model_v4 48 373 1 328 0.5851 0.7846
AF-O67214-F1-model_v4 53 372 1 351 0.5758 0.7422
AF-P54490-F1-model_v4 43 371 1 352 0.5684 0.7177
AF-P0CF99-F1-model_v4 53 406 1 379 0.563 0.686
AF-A5U3B9-F1-model_v4 53 406 1 379 0.5626 0.6859
AF-O07147-F1-model_v4 52 372 1 364 0.5612 0.7393
AF-Q56774-F1-model_v4 43 412 1 380 0.558 0.6527
AF-B2SUK8-F1-model_v4 43 397 1 380 0.5569 0.6761
AF-P9WMZ5-F1-model_v4 52 373 1 369 0.5569 0.7343
Download Full SwissProt Results