dbCAN Logo

PROTEIN: HRGMv2_4062_12_20

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_4062_12_20.pdb
Genome ID:
HRGMv2_4062
Protein ID:
HRGMv2_4062_12_20

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MKTAKKLVCV   TLALGIFGAA   FTGCGGVASG   TDITIDENGN   IVASADKATI   QVWSASDGEE 60
AARMKDLTAE   FNKKYAKYNV   QAVYTQKPSS   TYETTMKATL   TGESAPDVFY   ASDEYYKQWA 120
TLGFMENLDP   YIKSNCSEFN   MEQEIAGMFE   NTVGRYLYDV   KTTTATGPEA   HYYALPKGSG 180
ATAIYYNKNA   FATAGIKIVS   VYEKDLEAFN   NGGKDAAGNT   KQSLGITTTV   KAVGYDKENK 240
IFNNRISMSW   EECADLAAYV   QERTSVDYGF   LTSWWFNYGF   SVGGSCIGYV   PSDSETYNGG 300
YYLFTLTDAT   VNYKVKEGET   VTVNGTEYEG   NEILSFNDKF   YLTDELAAKC   EVLPSQRQAF 360
AEYLSLSAKK   NESNMSGKAG   ITDTFKEIIP   YKINGGISAY   ESALKSGSTD   KLAVGEVKYR 420
DITIRNKEVS   PNPETFNSYG   RAGYFISGDT   AMIVEVRASV   DDFRQIDDFD   WDVAPMLTYR 480
GQDKDGNEVS   GIPAAHSGSA   CACVWSGSTV   KNAAYLFVRF   ASGRDGQQIL   ADAGTIVMNE 540
KDLAQAHVDK   EVAAGKKPAN   MQIFVDGAYY   QTPGDWWFLS   DGDWIDDWAQ   AVNQKVRNGK 600
MTFPAFLTSS   QYRNTFTTLQ   KYTKKK 626
Protein Structure Viewer

Confidence Score (pLDDT)

Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-K0F8J3-F1-model_v4 18 624 18 436 0.716 0.884
AF-O53485-F1-model_v4 15 622 22 439 0.713 0.8856
AF-Q7AQ51-F1-model_v4 16 622 22 445 0.7125 0.8796
AF-Q8DNN7-F1-model_v4 22 626 28 437 0.6932 0.8747
AF-A0A133CDW9-F1-model_v4 20 624 29 444 0.6875 0.8634
AF-A0A133CPC5-F1-model_v4 42 621 30 423 0.6869 0.8843
AF-P71619-F1-model_v4 29 626 33 434 0.685 0.8794
AF-K0F002-F1-model_v4 31 621 43 439 0.6782 0.8843
AF-P76042-F1-model_v4 42 622 23 430 0.6781 0.8524
AF-K0F2E6-F1-model_v4 28 626 39 442 0.6763 0.8707
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
AF-K8EJG7-F1-model_v4 CBM50 , CE4 45 626 32 417 0.6487 0.8449
A0A9Q8PNJ5 GH4 6 622 98 866 0.5206 0.6166
AF-A0A7U1BNH7-F1-model_v4 GH10 44 625 27 740 0.496 0.5841
AF-A0A1Q2TKJ3-F1-model_v4 GH49 9 622 19 797 0.4928 0.5686
AF-A0A1B0VLS2-F1-model_v4 CBM0 1 626 421 951 0.4621 0.6597
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
K8EJG7 CBM50 , CE4 45 626 32 417 0.6487 0.8449
A0A9Q8PNJ5 GH4 6 622 98 866 0.5206 0.6166
A0A7U1BNH7 GH10 44 625 27 740 0.496 0.5841
A0A1Q2TKJ3 GH49 9 622 19 797 0.4928 0.5686
A0A242CSU4 CBM35 1 626 453 976 0.4561 0.6647
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
5f7v-assembly1.cif.gz_A 46 624 1 388 0.7127 0.8877
4mfi-assembly1.cif.gz_A 28 626 3 403 0.7115 0.8771
6x84-assembly2.cif.gz_B 46 626 1 414 0.709 0.8619
7bvt-assembly1.cif.gz_A 46 622 1 391 0.7084 0.8792
6rl2-assembly1.cif.gz_A 47 626 1 412 0.7035 0.8607
6r1b-assembly4.cif.gz_D 26 624 1 382 0.7033 0.8809
3uor-assembly2.cif.gz_B 48 626 1 394 0.7032 0.8722
5z6c-assembly1.cif.gz_A 49 622 1 376 0.699 0.8812
7c71-assembly2.cif.gz_B 47 624 1 415 0.6969 0.8454
7c6z-assembly1.cif.gz_A 47 624 1 415 0.6947 0.8429
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-Q8FVS7-F1-model_v4 31 621 21 411 0.6846 0.8741
AF-Q578M8-F1-model_v4 31 621 21 411 0.6835 0.8727
AF-Q2YKZ9-F1-model_v4 31 621 21 411 0.6812 0.8699
AF-A0QXD9-F1-model_v4 31 621 50 477 0.6805 0.8641
AF-Q53684-F1-model_v4 32 626 22 427 0.6792 0.8791
AF-P76042-F1-model_v4 42 622 23 430 0.6781 0.8524
AF-Q9K491-F1-model_v4 34 626 27 425 0.6701 0.8551
AF-O07009-F1-model_v4 37 626 27 421 0.6681 0.8555
AF-Q9KEE7-F1-model_v4 18 621 16 445 0.6655 0.8117
AF-O06989-F1-model_v4 23 626 25 417 0.6654 0.8517
Download Full SwissProt Results