PROTEIN: HRGMv2_4050_3_5
Loading protein structure...
Loading protein structure...
Protein File & Metadata
Source:
HRGMv2_4050_3_5.pdb
Genome ID:
Protein ID:
HRGMv2_4050_3_5
Loading protein structure information...
Detailed structural information will appear here after analysis...
Protein Sequence
MKIIAAFKTH FDIGYTKLAC DVLKQYSESM LDGVIETCEK TYDLGENRRY VWTMAAWPLA 60 RMLKDATPEK REKAEALIRR GQLVPHGLPF TTHTEILDRE QLAYGCGIAK KLCAKYGIPA 120 PISAKMTDVP GHTSGLIDVL VKNGIKFLHL GCNPASNPPE VPMLFWWEDL SGNRVLTMYN 180 KEYGSSALPP EGWKYPVWLA MQQTYDNVGP QGPDVIYNLE KEVEGIELKV GTMDDFYNEI 240 IKCDLSDLPV VRGEIGDTWI HGEGSYPVEV GVMRRTREKL KELRKLPGYG GKEILAKADE 300 ACENMLLFGE HTFGLDVRVY IGDNRRYDKA GFVEQRKEDR FKYIERSWDE QRAYARTAEK 360 RVNEIADMLG WKEKAIVPCE NSPFRAELRG DDIVVTMPNG KEVKVGYEYH SISFWKMNEF 420 LRHYLHRVVH WGLSDFGRDN HPENEGADFV GKAVGSRTEK GVLTVDYVSD KKSWEEFGNA 480 PEYSISVVCL ADRVRVKLEL KDKQASPMLE AGDMVFDAAT EGRNWLVTKC GQEIDPRTDI 540 VKGGNNLLYS TEKYAAIDDV AVRPIDAPLL TFGRNGIFVK TLDKFTVPEK TSMVFNLFNN 600 QWGTNFPLYT EGNMCFEFEI MDLATARKTL PLARTEDFAE 640
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P54746-F1-model_v4 | 1 | 640 | 5 | 848 | 0.6898 |
0.8036 |
| AF-Q8DN34-F1-model_v4 | 1 | 640 | 9 | 861 | 0.6885 |
0.8049 |
| AF-A0A132Z3E2-F1-model_v4 | 1 | 640 | 3 | 870 | 0.6844 |
0.8053 |
| AF-Q9VKV2-F1-model_v4 | 1 | 640 | 1 | 942 | 0.6582 |
0.7919 |
| AF-Q20829-F1-model_v4 | 1 | 640 | 30 | 945 | 0.6552 |
0.7898 |
| AF-Q4DCW2-F1-model_v4 | 1 | 640 | 25 | 971 | 0.6523 |
0.7926 |
| AF-Q4DXL4-F1-model_v4 | 1 | 640 | 25 | 971 | 0.6514 |
0.7914 |
| AF-K0ERM1-F1-model_v4 | 1 | 640 | 250 | 971 | 0.6509 |
0.7997 |
| AF-F1QTT0-F1-model_v4 | 1 | 640 | 43 | 976 | 0.6498 |
0.7916 |
| AF-A0A2K6VX37-F1-model_v4 | 1 | 640 | 48 | 960 | 0.6476 |
0.7865 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A7W7AR85 | GH0 | 1 | 624 | 27 | 662 | 0.8669 |
0.9114 |
| AF-D1CI43-F1-model_v4 | GH38 | 1 | 633 | 1 | 690 | 0.7315 |
0.7879 |
| A0A8F9XIG2 | GH38 | 1 | 633 | 2 | 684 | 0.7215 |
0.7785 |
| AF-B5YNY8-F1-model_v4 | GH38 | 1 | 639 | 1 | 731 | 0.721 |
0.7851 |
| AF-S0EVV1-F1-model_v4 | GH38 | 1 | 633 | 3 | 696 | 0.7202 |
0.7786 |
| AF-V9K9J3-F1-model_v4 | GH38 | 1 | 640 | 7 | 757 | 0.7161 |
0.7985 |
| AF-O58565-F1-model_v4 | GH38 | 1 | 640 | 4 | 852 | 0.7129 |
0.8223 |
| AF-A3DNM7-F1-model_v4 | GH38 | 1 | 640 | 3 | 849 | 0.7116 |
0.8192 |
| AF-D7D9H0-F1-model_v4 | GH38 | 1 | 640 | 3 | 849 | 0.7106 |
0.8184 |
| AF-A0A6G8QB93-F1-model_v4 | GH38 | 1 | 633 | 1 | 694 | 0.7086 |
0.787 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A1D7YQ67 | GH38 | 1 | 632 | 19 | 651 | 0.7242 |
0.7549 |
| A0A8F9XIG2 | GH38 | 1 | 633 | 2 | 684 | 0.7215 |
0.7785 |
| B5YNY8 | GH38 | 1 | 639 | 1 | 731 | 0.721 |
0.7851 |
| S0EVV1 | GH38 | 1 | 633 | 3 | 696 | 0.7202 |
0.7786 |
| A0A0X1KN47 | GH38 | 1 | 640 | 1 | 763 | 0.7169 |
0.7907 |
| D7D9H0 | GH38 | 1 | 640 | 3 | 849 | 0.7106 |
0.8184 |
| A0A6G8QB93 | GH38 | 1 | 633 | 1 | 694 | 0.7086 |
0.787 |
| A0A2Z2MZD4 | GH38 | 1 | 640 | 12 | 860 | 0.7079 |
0.82 |
| I0BFN8 | GH38 | 1 | 640 | 4 | 776 | 0.706 |
0.7954 |
| W0IXX9 | GH38 | 1 | 640 | 2 | 773 | 0.705 |
0.7938 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 5kbp-assembly1.cif.gz_B | 1 | 640 | 2 | 860 | 0.6905 |
0.8066 |
| 2wyh-assembly1.cif.gz_B | 1 | 640 | 2 | 867 | 0.6898 |
0.8084 |
| 5kbp-assembly1.cif.gz_A | 1 | 640 | 2 | 862 | 0.6897 |
0.8063 |
| 2wyi-assembly1.cif.gz_A | 1 | 640 | 4 | 872 | 0.687 |
0.8068 |
| 2wyi-assembly1.cif.gz_B | 1 | 640 | 2 | 872 | 0.6869 |
0.8068 |
| 2wyh-assembly1.cif.gz_A | 1 | 640 | 14 | 881 | 0.6842 |
0.8067 |
| 3lvt-assembly1.cif.gz_A | 1 | 640 | 5 | 809 | 0.6649 |
0.758 |
| 6b9p-assembly1.cif.gz_A | 1 | 640 | 13 | 930 | 0.6624 |
0.7912 |
| 6b9o-assembly1.cif.gz_A | 1 | 640 | 13 | 932 | 0.6624 |
0.7919 |
| 6b9o-assembly1.cif.gz_B | 1 | 640 | 13 | 934 | 0.6614 |
0.7913 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P54746-F1-model_v4 | 1 | 640 | 5 | 848 | 0.6898 |
0.8036 |
| AF-Q9KER1-F1-model_v4 | 1 | 640 | 3 | 870 | 0.6886 |
0.8088 |
| AF-Q54KN4-F1-model_v4 | 1 | 640 | 26 | 990 | 0.647 |
0.7915 |
| AF-Q29451-F1-model_v4 | 1 | 640 | 63 | 990 | 0.6451 |
0.7908 |
| AF-Q28949-F1-model_v4 | 1 | 640 | 27 | 989 | 0.6446 |
0.7892 |
| AF-Q8LPJ3-F1-model_v4 | 1 | 640 | 36 | 1007 | 0.6436 |
0.7962 |
| AF-Q8VHC8-F1-model_v4 | 1 | 640 | 60 | 998 | 0.643 |
0.7905 |
| AF-P94078-F1-model_v4 | 1 | 640 | 37 | 1000 | 0.6429 |
0.7939 |
| AF-O46432-F1-model_v4 | 1 | 640 | 63 | 998 | 0.6426 |
0.7902 |
| AF-Q9Y2E5-F1-model_v4 | 1 | 640 | 27 | 1003 | 0.6422 |
0.79 |