PROTEIN: HRGMv2_3991_87_18
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Protein File & Metadata
Source:
HRGMv2_3991_87_18.pdb
Genome ID:
Protein ID:
HRGMv2_3991_87_18
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Protein Sequence
MNKNFPFYDW VPKPLGIIFL IFLFIPIMTV GGVYSANSSE MVGGLGIISE HISFVGFATS 60 VGMAAFSPFF YDLVCIRREK IMLMWGFGIL IVLSFVCART DSVYVLALCS LVMGFVRQAL 120 LMCNLFTLIT YGFHIEATHN LTPGNEPTTE EGWDKLDYEK TASMPIIYYF FMVLGQIGTW 180 LTAWFAYNYE WQYVYYAMIA VLGVAVIIVW LTMPYNPFPN NRIPINFSKF GDFTVFSIAC 240 LSFIYIMVYG KVLDWYDDQR IQLATLICIV SVLLFIFLER TRRSAYFLIT ALKSRSIQGG 300 ILLFLGLMIF NSSAMFVNVF MSVGMKMDNL QIAEVGNWVL LGYFIGLVMA IFCSSKKIHF 360 KWLFFWGFIF IGLSAVYMYF EVQTEGMMER MKWPIIIRAA GMMLLYACTA VYANQRMPYK 420 LMSTWVCIML TVRMIIGPGI GSALYSNVLQ HRQQYYVTRY AQDFDRMDAE TAKTYDMTVQ 480 GMKMQGKTDA EAQQMAALQL KGKVTVQATL TTIKEMAGWT FYGCIICAGI ILFVPWPKRK 540 LQDWERIPRD VKFRFR 556
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P0AEJ0-F1-model_v4 | 1 | 544 | 3 | 507 | 0.8164 |
0.8768 |
| AF-P52600-F1-model_v4 | 1 | 541 | 7 | 508 | 0.8124 |
0.8777 |
| AF-A0A0H3GNL5-F1-model_v4 | 1 | 541 | 8 | 520 | 0.8071 |
0.8611 |
| AF-P44927-F1-model_v4 | 1 | 541 | 7 | 508 | 0.806 |
0.87 |
| AF-Q5F680-F1-model_v4 | 1 | 541 | 1 | 502 | 0.8041 |
0.8641 |
| AF-Q32DH7-F1-model_v4 | 1 | 540 | 6 | 507 | 0.8009 |
0.866 |
| AF-A0A0H3GSP9-F1-model_v4 | 1 | 540 | 5 | 538 | 0.7856 |
0.829 |
| AF-Q9I4A2-F1-model_v4 | 3 | 538 | 8 | 503 | 0.7798 |
0.8458 |
| AF-Q9HZ88-F1-model_v4 | 6 | 540 | 1 | 488 | 0.7756 |
0.851 |
| AF-Q8ZMK8-F1-model_v4 | 6 | 542 | 7 | 505 | 0.7731 |
0.8415 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A160T6G0-F1-model_v4 | CBM9 | 1 | 546 | 10 | 541 | 0.7272 |
0.7771 |
| AF-Q6NMN6-F1-model_v4 | GT5 | 2 | 556 | 19 | 481 | 0.6315 |
0.7239 |
| ARF89445.1 | GT1 | 1 | 540 | 362 | 952 | 0.6283 |
0.8214 |
| AF-A0A387HHJ8-F1-model_v4 | GT1 | 2 | 551 | 31 | 545 | 0.5877 |
0.8045 |
| AF-A0A7H8RF34-F1-model_v4 | CBM24 | 2 | 549 | 272 | 764 | 0.5244 |
0.6911 |
| A0A918L8E6 | GT2 | 12 | 546 | 2 | 414 | 0.5133 |
0.7443 |
| A0A9Q9RZ67 | GH78 | 1 | 545 | 748 | 1455 | 0.5051 |
0.75 |
| AF-A0A7H8QT70-F1-model_v4 | GH27 | 1 | 550 | 112 | 719 | 0.4941 |
0.6512 |
| AF-S5VEU6-F1-model_v4 | CE14 | 11 | 546 | 21 | 787 | 0.4936 |
0.6113 |
| F9G000 | GH3 | 5 | 555 | 55 | 568 | 0.4917 |
0.765 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A160T6G0 | CBM9 | 1 | 546 | 10 | 541 | 0.7272 |
0.7771 |
| ARF89445.1 | GT1 | 1 | 540 | 362 | 952 | 0.6283 |
0.8214 |
| A0A387HHJ8 | GT1 | 2 | 551 | 31 | 545 | 0.5877 |
0.8045 |
| A0A7H8RF34 | CBM24 | 2 | 549 | 272 | 764 | 0.5244 |
0.6911 |
| A0A918L8E6 | GT2 | 12 | 546 | 2 | 414 | 0.5133 |
0.7443 |
| A0A9Q9RZ67 | GH78 | 1 | 545 | 748 | 1455 | 0.5051 |
0.75 |
| A0A7H8QT70 | GH27 | 1 | 550 | 112 | 719 | 0.4941 |
0.6512 |
| S5VEU6 | CE14 | 11 | 546 | 21 | 787 | 0.4936 |
0.6113 |
| F9G000 | GH3 | 5 | 555 | 55 | 568 | 0.4917 |
0.765 |
| WEJ96607.1 | GT91 | 1 | 556 | 652 | 1123 | 0.483 |
0.7515 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 8pnl-assembly1.cif.gz_A | 3 | 538 | 1 | 483 | 0.7359 |
0.8052 |
| 7y58-assembly1.cif.gz_A | 1 | 544 | 1 | 509 | 0.7251 |
0.776 |
| 8pnl-assembly2.cif.gz_C | 3 | 538 | 1 | 486 | 0.7242 |
0.7907 |
| 7d5p-assembly1.cif.gz_A | 13 | 538 | 1 | 408 | 0.6989 |
0.8199 |
| 7d5p-assembly2.cif.gz_B | 13 | 538 | 1 | 413 | 0.6971 |
0.8141 |
| 7d5q-assembly2.cif.gz_B | 16 | 538 | 1 | 411 | 0.694 |
0.8121 |
| 7d5q-assembly1.cif.gz_A | 13 | 538 | 1 | 403 | 0.6935 |
0.8176 |
| 6gs4-assembly1.cif.gz_A | 12 | 542 | 2 | 468 | 0.6733 |
0.7495 |
| 7zc2-assembly1.cif.gz_A | 2 | 536 | 4 | 470 | 0.663 |
0.7404 |
| 8dwi-assembly1.cif.gz_A | 3 | 549 | 1 | 424 | 0.6582 |
0.7607 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P0AEJ1-F1-model_v4 | 1 | 543 | 3 | 506 | 0.8187 |
0.8807 |
| AF-P0AEJ0-F1-model_v4 | 1 | 544 | 3 | 507 | 0.8164 |
0.8768 |
| AF-P52600-F1-model_v4 | 1 | 541 | 7 | 508 | 0.8124 |
0.8777 |
| AF-P44927-F1-model_v4 | 1 | 541 | 7 | 508 | 0.806 |
0.87 |
| AF-Q9RQ29-F1-model_v4 | 1 | 542 | 2 | 503 | 0.8047 |
0.8659 |
| AF-P0DPR7-F1-model_v4 | 1 | 540 | 9 | 512 | 0.7958 |
0.8583 |
| AF-P37594-F1-model_v4 | 4 | 541 | 1 | 495 | 0.7701 |
0.8308 |
| AF-D0ZXQ3-F1-model_v4 | 4 | 542 | 1 | 495 | 0.7661 |
0.827 |
| AF-P94574-F1-model_v4 | 3 | 541 | 1 | 452 | 0.7637 |
0.8569 |
| AF-P9WJW9-F1-model_v4 | 3 | 541 | 1 | 508 | 0.7628 |
0.8141 |