PROTEIN: HRGMv2_3979_34_140
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Protein File & Metadata
Source:
HRGMv2_3979_34_140.pdb
Genome ID:
Protein ID:
HRGMv2_3979_34_140
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Protein Sequence
MNKLRLHALT GLLTTMGVLV LCSIKAHAQD LPTCVKTSLQ DKFHVQGIAY DRERNCMYMS 60 FTTSLLKVDM QGRVLGSVEG LTGHLGCISL NPDDGRLYGS LEYKHDAIGQ GIMSGLGGIK 120 NDESTGFYVA IFDVARINRE HISAEEVMTT VYLHPAVRDY QTSVTNQGRI VEHRFGCSGV 180 DGLTLAPHWG KQKKRHMLYV AYGIYSENDR TDNDYQVLLC YDVKKLRKYE QTISPQNLHH 240 SGPKKANHTY YIYTGNTSWG VQNLCYDSHT GHMLAAVYAG KKPEWKNFGL YVVDGQRKPA 300 KEILRGVEPK TSGQVLPLLK QGEQDTVHDT WGWNFQWGNT GLTSLGDGRF YVSVGGRDKA 360 TGRQYCEAKM FRWEDNKGLV PVEK 384
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-K0EWG9-F1-model_v4 | 20 | 384 | 14 | 372 | 0.8627 |
0.9157 |
| AF-A0A0K0DZ69-F1-model_v4 | 31 | 382 | 48 | 323 | 0.517 |
0.6622 |
| AF-A0A044R103-F1-model_v4 | 32 | 384 | 53 | 366 | 0.461 |
0.563 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A1Q2CQH8-F1-model_v4 | CBM5 | 28 | 384 | 42 | 386 | 0.7499 |
0.9338 |
| AF-A0A1H2DBM0-F1-model_v4 | GH43_5 | 33 | 382 | 31 | 321 | 0.5928 |
0.7229 |
| AF-A0A143BYR2-F1-model_v4 | GH43_5 | 33 | 382 | 34 | 326 | 0.589 |
0.7191 |
| AF-A0A1D7MKL5-F1-model_v4 | GH43_5 | 32 | 381 | 37 | 324 | 0.5875 |
0.726 |
| AF-V5LER1-F1-model_v4 | GH43_5 | 32 | 381 | 37 | 324 | 0.5872 |
0.7256 |
| AF-A0A5B8JUC2-F1-model_v4 | GH43_5 | 32 | 381 | 37 | 324 | 0.5865 |
0.7249 |
| AF-A0A7M2A2V0-F1-model_v4 | GH43_5 | 31 | 381 | 35 | 325 | 0.5861 |
0.7188 |
| AF-E0RHQ6-F1-model_v4 | GH43_5 | 32 | 381 | 37 | 324 | 0.586 |
0.7239 |
| AF-A0A7Y3TAN9-F1-model_v4 | GH43_5 | 33 | 382 | 44 | 334 | 0.5791 |
0.7199 |
| AF-A0A7Z2V7M5-F1-model_v4 | GH43_5 | 33 | 382 | 47 | 334 | 0.5771 |
0.7234 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A1Q2CQH8 | CBM5 | 28 | 384 | 42 | 386 | 0.7499 |
0.9338 |
| A0A7Z2ZUF4 | GH43_5 | 31 | 381 | 29 | 313 | 0.591 |
0.7248 |
| APR80536.1 | GH43_5 | 16 | 384 | 1 | 394 | 0.5751 |
0.6261 |
| A0A7D6XNF3 | GH43_3 | 29 | 384 | 35 | 329 | 0.573 |
0.7037 |
| QJJ63771.1 | GH43_24 | 27 | 384 | 16 | 344 | 0.5599 |
0.6433 |
| E5AAY1 | GH43_26 | 22 | 384 | 49 | 357 | 0.552 |
0.674 |
| A0A5K7XNV3 | GH43 | 29 | 384 | 70 | 361 | 0.5302 |
0.6809 |
| A0A7H1MVW6 | CBM13 , GH43_7 | 34 | 384 | 37 | 319 | 0.4944 |
0.7429 |
| A0A9W6NTG0 | CBM13 , GH43_24 | 28 | 384 | 25 | 328 | 0.4836 |
0.6635 |
| QDV86199.1 | GH33 | 23 | 384 | 28 | 272 | 0.472 |
0.9124 |
Structural Homologs - PDB
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs - SwissProt
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.