PROTEIN: HRGMv2_3900_50_6
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Protein File & Metadata
Source:
HRGMv2_3900_50_6.pdb
Genome ID:
Protein ID:
HRGMv2_3900_50_6
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Protein Sequence
MTAYSPTVME RSRSLMILVL MSLCTVSAWA CTSAIVSGRL TRDGRPLMWK HRDTGCVDNF 60 VAPVRACSSD ELDYVALFNM GDSLLTEAWI GMNEAGFAVM NTASYNLAPD TAQYKDREGD 120 IMSKALKVCR SLRDFETLLD GMPRPLGVQA NFGAIDAEGN AAYYETCDTG YVKFDLADVP 180 EGYLTRTNYS CSGSPDAGFG YIREQNELTL LAPAVEACAV APETFTENLS RSFYHSLLGR 240 DVSADSTEWI VDQDLIPRYS SSASVVVEGV RPGDNDDVMV MWTALGYPPC SYVHGVTVDE 300 VPEGLLPSGA EWRSRFCDEV MARKAEVFPI KRGSGSHYIH LPSLKRHIDE CEKMSRKNYI 360 EYRNKLGR 368
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q8ZQ55-F1-model_v4 | 22 | 368 | 11 | 434 | 0.6928 |
0.846 |
| AF-Q9HVB8-F1-model_v4 | 30 | 366 | 1 | 376 | 0.6899 |
0.805 |
| AF-A0A077ZFA6-F1-model_v4 | 25 | 368 | 11 | 427 | 0.6875 |
0.8372 |
| AF-Q6AYR8-F1-model_v4 | 21 | 368 | 2 | 399 | 0.6839 |
0.7838 |
| AF-Q6AY84-F1-model_v4 | 25 | 368 | 1 | 389 | 0.6802 |
0.7811 |
| AF-Q9CZC8-F1-model_v4 | 25 | 368 | 1 | 389 | 0.6798 |
0.7806 |
| AF-Q5TYS5-F1-model_v4 | 23 | 368 | 2 | 392 | 0.6797 |
0.7768 |
| AF-Q9VI64-F1-model_v4 | 28 | 368 | 1 | 329 | 0.6795 |
0.757 |
| AF-Q12765-F1-model_v4 | 24 | 368 | 1 | 389 | 0.6795 |
0.7782 |
| AF-Q803W1-F1-model_v4 | 25 | 368 | 1 | 391 | 0.6794 |
0.7825 |
Structural Homologs -
CAZyme3D-Whole
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| AF-A0A7T7V2N8-F1-model_v4 | CBM48 | 1 | 342 | 3 | 446 | 0.5578 |
0.676 |
| A0A1A6CBZ3 | CBM48 | 1 | 343 | 1 | 445 | 0.5546 |
0.6686 |
| A0A495MGD5 | CBM48 | 1 | 343 | 2 | 456 | 0.5539 |
0.6753 |
| AF-A0A7U7CXM2-F1-model_v4 | CBM48 | 2 | 341 | 1 | 466 | 0.5491 |
0.6735 |
| A0A9E9JXR8 | CBM0 | 12 | 354 | 335 | 977 | 0.423 |
0.6779 |
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A1A6CBZ3 | CBM48 | 1 | 343 | 1 | 445 | 0.5546 |
0.6686 |
| A0A495MGD5 | CBM48 | 1 | 343 | 2 | 456 | 0.5539 |
0.6753 |
| A0A7U7CXM2 | CBM48 | 2 | 341 | 1 | 466 | 0.5491 |
0.6735 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 5img-assembly1.cif.gz_D | 24 | 368 | 1 | 418 | 0.6921 |
0.8339 |
| 5imh-assembly1.cif.gz_E | 24 | 368 | 1 | 418 | 0.6663 |
0.8032 |
| 6dxx-assembly3.cif.gz_F | 31 | 321 | 1 | 231 | 0.6613 |
0.8246 |
| 6dxy-assembly2.cif.gz_D | 31 | 324 | 1 | 230 | 0.6587 |
0.8229 |
| 6dxz-assembly1.cif.gz_B | 31 | 324 | 1 | 230 | 0.6583 |
0.8221 |
| 6dy2-assembly2.cif.gz_D | 31 | 321 | 1 | 232 | 0.6564 |
0.8172 |
| 6dy3-assembly4.cif.gz_H | 31 | 324 | 1 | 234 | 0.6543 |
0.8122 |
| 6mhm-assembly1.cif.gz_B | 31 | 341 | 1 | 250 | 0.6372 |
0.7751 |
| 3fgt-assembly1.cif.gz_B | 31 | 365 | 1 | 344 | 0.6083 |
0.6623 |
| 8esl-assembly1.cif.gz_D | 31 | 362 | 1 | 282 | 0.5987 |
0.7078 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-Q9CIV4-F1-model_v4 | 29 | 368 | 1 | 416 | 0.6964 |
0.8443 |
| AF-P0DD25-F1-model_v4 | 29 | 368 | 1 | 417 | 0.6935 |
0.845 |
| AF-P0DD24-F1-model_v4 | 29 | 368 | 1 | 417 | 0.6934 |
0.8455 |
| AF-Q5XD16-F1-model_v4 | 29 | 368 | 1 | 417 | 0.6929 |
0.8446 |
| AF-Q9A0M0-F1-model_v4 | 26 | 368 | 5 | 424 | 0.692 |
0.8421 |
| AF-Q8P1N3-F1-model_v4 | 26 | 368 | 5 | 424 | 0.6919 |
0.8416 |
| AF-Q48558-F1-model_v4 | 26 | 368 | 1 | 425 | 0.6919 |
0.8434 |
| AF-Q9CFC3-F1-model_v4 | 24 | 368 | 4 | 425 | 0.6906 |
0.8366 |
| AF-Q48841-F1-model_v4 | 24 | 368 | 3 | 422 | 0.6903 |
0.8362 |
| AF-Q6AYR8-F1-model_v4 | 21 | 368 | 2 | 399 | 0.6839 |
0.7838 |