PROTEIN: HRGMv2_2234_53_6
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Protein File & Metadata
Source:
HRGMv2_2234_53_6.pdb
Genome ID:
Protein ID:
HRGMv2_2234_53_6
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Protein Sequence
MDKQILEKQI FTNDVIISWL QYYSQNTSVD LEHVKMIDIT KKNKNVIPTV EAHKTTMVFT 60 NAGVEDIFYR LWDAGLGECE VWYNEGSSPS GAILHNYVKD MINRGINASA AMLIINPNAR 120 NTAKIGLANE LFQRGSIHYV GSEIRAIILS KMNVAPTDDI CVISGESIAI EAALIAVEGS 180 VTAVEYNQAD RATMEDNVGH FGLHNVNIIE HVDERSMSGC PMPSLVFLVA SASTEQELAY 240 LTQLNPNIRV VIYTLDFNVA ASLPAMLETY GIRDTETIQV SVSTLGSNRA FKQQPAPWII 300 TGRC 304
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs -
AFDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P9WGA9-F1-model_v4 | 3 | 304 | 52 | 389 | 0.7127 |
0.8217 |
| AF-K0F1M0-F1-model_v4 | 1 | 304 | 3 | 409 | 0.7106 |
0.8398 |
| AF-Q9HZU0-F1-model_v4 | 3 | 304 | 62 | 405 | 0.7055 |
0.8341 |
| AF-Q57836-F1-model_v4 | 121 | 304 | 1 | 183 | 0.7021 |
0.8892 |
| AF-A0A0H3GWZ3-F1-model_v4 | 127 | 304 | 1 | 185 | 0.6765 |
0.8965 |
| AF-Q05632-F1-model_v4 | 127 | 304 | 1 | 185 | 0.6702 |
0.8957 |
| AF-B0BNB3-F1-model_v4 | 53 | 304 | 1 | 209 | 0.5749 |
0.6973 |
| AF-Q8K1A0-F1-model_v4 | 53 | 304 | 1 | 209 | 0.5744 |
0.6968 |
| AF-Q9NRN9-F1-model_v4 | 35 | 304 | 1 | 209 | 0.5741 |
0.6966 |
| AF-P9WFZ1-F1-model_v4 | 47 | 304 | 1 | 260 | 0.5656 |
0.6512 |
Structural Homologs - CAZyme3D-Whole
No structural homologs were found using the cutoff E-value 1e-5 and TM-score threshold > 0.45.
Structural Homologs -
CAZyme-ID50
| Target | CAZyme Family | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|---|
| A0A5Q3Q508 | GT2 , GT4 | 130 | 304 | 7 | 239 | 0.2941 |
0.7604 |
Structural Homologs -
PDB
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| 3e05-assembly2.cif.gz_H | 48 | 304 | 1 | 190 | 0.7003 |
0.8779 |
| 3e05-assembly2.cif.gz_F | 75 | 304 | 1 | 186 | 0.6998 |
0.8845 |
| 3e05-assembly1.cif.gz_A | 51 | 304 | 1 | 187 | 0.6989 |
0.8815 |
| 3e05-assembly2.cif.gz_C | 51 | 304 | 1 | 190 | 0.6978 |
0.8725 |
| 3e05-assembly1.cif.gz_G | 51 | 304 | 1 | 189 | 0.6944 |
0.8698 |
| 2yxd-assembly1.cif.gz_A | 124 | 304 | 1 | 180 | 0.6873 |
0.8767 |
| 1f38-assembly1.cif.gz_A | 126 | 304 | 1 | 186 | 0.6823 |
0.8915 |
| 3njr-assembly1.cif.gz_A | 120 | 304 | 1 | 184 | 0.6591 |
0.8366 |
| 3hm2-assembly1.cif.gz_C | 128 | 304 | 1 | 168 | 0.6386 |
0.8415 |
| 3hm2-assembly2.cif.gz_H | 129 | 304 | 2 | 166 | 0.6384 |
0.8494 |
Structural Homologs -
SwissProt
| Target | Q-Start | Q-End | T-Start | T-End | Avg TM | Align TM |
|---|---|---|---|---|---|---|
| AF-P9WGA9-F1-model_v4 | 3 | 304 | 52 | 389 | 0.7127 |
0.8217 |
| AF-O87694-F1-model_v4 | 5 | 304 | 52 | 396 | 0.7114 |
0.8338 |
| AF-P9WGA8-F1-model_v4 | 4 | 304 | 53 | 389 | 0.7076 |
0.8187 |
| AF-Q9HZU0-F1-model_v4 | 3 | 304 | 62 | 405 | 0.7055 |
0.8341 |
| AF-Q57836-F1-model_v4 | 121 | 304 | 1 | 183 | 0.7021 |
0.8892 |
| AF-P21921-F1-model_v4 | 3 | 304 | 66 | 412 | 0.7019 |
0.8284 |
| AF-Q97WC7-F1-model_v4 | 47 | 304 | 1 | 198 | 0.7008 |
0.8634 |
| AF-C3NJQ5-F1-model_v4 | 47 | 304 | 1 | 198 | 0.7007 |
0.8632 |
| AF-C4KJM8-F1-model_v4 | 74 | 304 | 1 | 198 | 0.7001 |
0.8632 |
| AF-C3MTW8-F1-model_v4 | 74 | 304 | 1 | 198 | 0.7001 |
0.8625 |