dbCAN Logo

PROTEIN: HRGMv2_1488_11_43

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_1488_11_43.pdb
Genome ID:
HRGMv2_1488
Protein ID:
HRGMv2_1488_11_43

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MRAFDFEMSR   RGFASALAAG   ALSLALAGCG   SGAAGAGSAA   GSAATGGAGA   AAEPVEVHVA 60
SLKGPTSIGL   VQFMDRAADG   ETNNEFDFAI   NTAADEIVPK   VIQGDIDIAL   VPANVASVLY 120
NKTEGAVQVI   DINTLGVLNV   VTGDASVASF   GDLAGRTVYM   TGKGTTPEYV   MNFLLERAGL 180
TGQVTLEFKS   EPTEVLSALL   ADPSAVGVLP   EPFKTAAIAK   SEGKLSAPVS   LTDVWDELAG 240
DTGSRLLTGV   TVVRRAFAEE   HPEAVAEFLS   CHAASVKAVN   AAPADWAQAV   VDAGIVDNAK 300
IAEKAIPGCM   LVCQTGKDMK   AALSGYLQVL   SDADASAVGG   KLPADDFYYM   E 351
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-Q5F6W2-F1-model_v4 53 350 28 325 0.7521 0.8665
AF-A0A0H3GZA9-F1-model_v4 52 351 25 310 0.7133 0.8483
AF-Q9I0P2-F1-model_v4 50 351 19 306 0.713 0.8407
AF-A0A0H3GP99-F1-model_v4 47 351 19 318 0.7096 0.8163
AF-A0A0D2GYL1-F1-model_v4 54 351 1 295 0.7056 0.8067
AF-U7PRE8-F1-model_v4 51 351 14 321 0.6911 0.7955
AF-A0A0H3GR32-F1-model_v4 51 351 46 344 0.6895 0.8157
AF-U7Q5Y8-F1-model_v4 49 351 2 313 0.6867 0.7879
AF-U7PXF6-F1-model_v4 54 351 1 294 0.6847 0.8087
AF-Q9I0N8-F1-model_v4 53 351 25 310 0.6828 0.8065
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
AF-L0RFS4-F1-model_v4 GH23 36 304 5 451 0.4331 0.6354
AF-F7LTV0-F1-model_v4 GH23 52 301 37 443 0.4312 0.6681
A0A975KCS4 GH23 49 302 43 339 0.4293 0.6636
AF-E1WT20-F1-model_v4 GH23 52 301 37 443 0.4289 0.6642
AF-A0A0K6BW89-F1-model_v4 GH23 52 301 37 443 0.4286 0.6653
AF-A0A0P0GMK8-F1-model_v4 GH23 52 301 38 443 0.4273 0.662
AF-B3PLH7-F1-model_v4 GH23 52 301 40 442 0.4271 0.6805
AF-C6BRT1-F1-model_v4 GH23 42 304 34 474 0.4249 0.6456
AF-A0A2R3MPV0-F1-model_v4 GH23 52 301 34 439 0.4216 0.6558
AF-F9Z9C7-F1-model_v4 GH23 52 300 37 282 0.4168 0.6535
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
A0A858SWS8 CBM50 38 305 86 353 0.4547 0.5966
A0A975KCS4 GH23 49 302 43 339 0.4293 0.6636
C6BRT1 GH23 42 304 34 474 0.4249 0.6456
A8ZWR8 GH23 26 304 10 450 0.4141 0.5808
A0A1Y3Y3U2 GH23 52 299 37 282 0.4105 0.6432
F3Z2E8 GH23 55 304 43 459 0.4101 0.6447
A0A0S2HZI4 GH23 24 299 33 305 0.4003 0.585
A0A3T0VQB1 GH23 52 304 46 466 0.3985 0.6309
A0A7R6TN95 GH23 53 304 63 498 0.3865 0.6196
A0A5J6WN12 GH23 7 302 101 557 0.3629 0.5717
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
3hn0-assembly1.cif.gz_A 54 351 1 279 0.7919 0.8982
2x26-assembly2.cif.gz_B 53 350 1 286 0.7365 0.8387
2x26-assembly1.cif.gz_A 53 351 1 287 0.7184 0.8374
3un6-assembly1.cif.gz_A 54 351 1 283 0.6853 0.7901
3uif-assembly1.cif.gz_A 53 351 3 307 0.6784 0.7885
3ksx-assembly1.cif.gz_A 52 351 1 289 0.6682 0.7569
7ahr-assembly1.cif.gz_A 54 351 5 280 0.6631 0.7743
6st1-assembly2.cif.gz_B 56 351 1 295 0.6568 0.7404
7an6-assembly1.cif.gz_B 54 351 5 282 0.6565 0.7624
7an9-assembly1.cif.gz_B 55 351 1 277 0.6558 0.7562
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-C0SP84-F1-model_v4 52 351 28 325 0.6926 0.81
AF-A9WGD2-F1-model_v4 52 351 42 344 0.6801 0.8077
AF-Q9KXN1-F1-model_v4 53 350 1 282 0.6776 0.7747
AF-P75853-F1-model_v4 45 351 16 311 0.6656 0.7709
AF-Q5SI12-F1-model_v4 55 349 1 272 0.6495 0.7543
AF-Q8FUN4-F1-model_v4 50 351 19 317 0.6476 0.7429
AF-Q5ZV75-F1-model_v4 53 351 5 297 0.6413 0.748
AF-Q576E1-F1-model_v4 52 351 21 317 0.638 0.7374
AF-Q47537-F1-model_v4 53 351 20 317 0.6375 0.7367
AF-Q2YJB6-F1-model_v4 50 351 19 317 0.6367 0.7322
Download Full SwissProt Results