dbCAN Logo

PROTEIN: HRGMv2_0713_41_5

Loading protein structure...

Protein File & Metadata
Download PDB File
Source:
HRGMv2_0713_41_5.pdb
Genome ID:
HRGMv2_0713
Protein ID:
HRGMv2_0713_41_5

Loading protein structure information...

Detailed structural information will appear here after analysis...

Protein Sequence 
MQKKLVVAML   CLLFALVPFA   GCAGGGGPSQ   SLEELGYQYK   DTSKPIIAEK   GAQKYDIISQ 60
KNPQADDYND   MKVLNDLEDS   TNVDIQWQNL   SAGQYAEQKN   LIMSDKRNWP   DSIYHAYFSD 120
AEMIRYSTRK   TFLAVSDYLQ   YMPNLSAILE   KRPDVKKAIT   MPDGKIWSLP   RVEEMGLVMH 180
PNLFFMNKNW   LLKLVNDGSI   NFLKASDVKD   GLDLTVDQLG   QILEYFKGDM   NGNGKSDEIP 240
LNFVYNNYFQ   GNQADLYAAF   GFPANVDFRT   VIDGKVTNMA   VLDEYYQAVN   YYADWVQRKL 300
IPTNVFENSE   ETFLASGKGV   EKLGAFYWWE   AETVVEHPEN   YIYLNPLIGP   NGDQMVGLSN 360
SPEISKCLAV   VFANCPNPEV   LFTYYDRYYD   PYVSAQIVYG   PVGIVYEEEL   DENGMLVQKP 420
IPDGMTADEF   RLKNAPMGIS   YLSQETWDNY   LNMEPRAKLR   VKNLEKYIDP   FVPSNVDTFS 480
NPIYTLEEIN   TLAQYEQNIT   DYINKKQIDW   LRNGGVGKSA   WETYKADLKS   LHIDEVYAIY 540
QRGYERSVAD 550
Protein Structure Viewer
Confidence Score (pLDDT)
Very Low (<50)
Low (50-70)
High (70-90)
Very High (>90)
Low Confidence
High Confidence
Structural Homologs - AFDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-A0A133CZN8-F1-model_v4 11 550 11 502 0.7015 0.7693
AF-A0A133D019-F1-model_v4 16 550 26 485 0.6591 0.7545
AF-A0A133CDW9-F1-model_v4 17 539 29 443 0.6137 0.7378
AF-O53485-F1-model_v4 11 539 22 439 0.6059 0.7214
AF-K0F7X1-F1-model_v4 13 536 15 409 0.6053 0.7329
AF-A0A133CPC5-F1-model_v4 30 536 27 423 0.5998 0.7333
AF-Q7AQ51-F1-model_v4 13 539 23 445 0.5986 0.71
AF-K0F8J3-F1-model_v4 15 537 18 433 0.5972 0.7112
AF-Q9CBN6-F1-model_v4 24 536 25 445 0.5949 0.7085
AF-A0A0H3GKX2-F1-model_v4 16 535 22 396 0.5938 0.7385
Download Full AFDB Results
Structural Homologs - CAZyme3D-Whole
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
A0A0M1Q963 GH43_11 29 550 36 506 0.6972 0.7953
A0A9Q8PNJ5 GH4 1 539 230 866 0.484 0.6083
Download Full CAZyme3D-Whole Results
Structural Homologs - CAZyme-ID50
Target CAZyme Family Q-Start Q-End T-Start T-End Avg TM Align TM
A0A0M1Q963 GH43_11 29 550 36 506 0.6972 0.7953
K8EJG7 CBM50 , CE4 26 539 29 417 0.5983 0.7394
A0A9Q8PNJ5 GH4 1 539 230 866 0.484 0.6083
A0A7U1BNH7 GH10 34 541 23 742 0.4652 0.5829
A0A242CSU4 CBM35 22 550 567 997 0.4305 0.6862
Download Full CAZyme-ID50 Results
Structural Homologs - PDB
Target Q-Start Q-End T-Start T-End Avg TM Align TM
5g62-assembly2.cif.gz_B 53 550 1 491 0.8605 0.9183
5g5y-assembly1.cif.gz_A 48 550 1 494 0.8231 0.8805
6fth-assembly1.cif.gz_A 34 550 1 496 0.8095 0.8654
3omb-assembly1.cif.gz_A 29 549 1 503 0.8078 0.8579
5xs8-assembly1.cif.gz_A 51 544 1 474 0.7844 0.8561
4tqu-assembly1.cif.gz_Q 36 550 1 492 0.7802 0.8403
5h6u-assembly1.cif.gz_A 42 549 1 487 0.7764 0.8398
3vlw-assembly2.cif.gz_B 42 549 1 489 0.7758 0.8381
6jhx-assembly2.cif.gz_B 41 546 1 483 0.7709 0.837
5suo-assembly1.cif.gz_A 52 550 1 451 0.6702 0.7548
Download Full PDB Results
Structural Homologs - SwissProt
Target Q-Start Q-End T-Start T-End Avg TM Align TM
AF-A0A0H2URD6-F1-model_v4 22 550 25 536 0.844 0.9068
AF-P37966-F1-model_v4 31 549 27 502 0.7108 0.7996
AF-Q795R2-F1-model_v4 31 549 30 498 0.6623 0.7554
AF-Q8FVS7-F1-model_v4 27 539 20 411 0.6267 0.7631
AF-Q578M8-F1-model_v4 27 539 20 411 0.626 0.7623
AF-Q2YKZ9-F1-model_v4 27 539 20 411 0.625 0.7611
AF-A0A0H2UMY0-F1-model_v4 9 550 20 490 0.6059 0.6864
AF-Q7LYW7-F1-model_v4 38 539 36 450 0.6019 0.7276
AF-O07009-F1-model_v4 31 539 29 421 0.6018 0.7399
AF-O06989-F1-model_v4 19 539 22 415 0.5903 0.7216
Download Full SwissProt Results