Genome Details
Selected Rep_genome_ID: GH018_maxbin.012
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D peruense
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| GH018_maxbin.012 | 2,498,070 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_3644 | 2,435,952 | 99.3% | 0% | Cameroon | Africa | HRGM |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_K_18_2626.299 | 2,466,639 | 99.3% | 0% | NA | Africa | Hadza |
| Rep_18 | 2,347,794 | 99.3007% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| GH018_maxbin.012_CGC11 | CGCFAM_00007 | Yes | 11 | 3 | |
| GH018_maxbin.012_CGC23 | CGCFAM_00047 | Yes | 6 | 1 | |
| GH018_maxbin.012_CGC5 | CGCFAM_00424 | Yes | 4 | 1 | |
| GH018_maxbin.012_CGC26 | CGCFAM_00771 | Yes | 5 | 2 | |
| GH018_maxbin.012_CGC10 | CGCFAM_01317 | Yes | 7 | 1 | |
| GH018_maxbin.012_CGC21 | CGCFAM_01488 | Yes | 3 | 1 | |
| GH018_maxbin.012_CGC15 | CGCFAM_01618 | Yes | 5 | 2 | |
| GH018_maxbin.012_CGC4 | CGCFAM_02482 | Yes | 3 | 1 | |
| GH018_maxbin.012_CGC13 | CGCFAM_05900 | Yes | 5 | 2 | |
| GH018_maxbin.012_CGC16 | CGCFAM_09367 | Yes | 3 | 1 |
Top CAZyme Families