Cluster: YassourM_2018_SRR7281056_bin.6_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: YassourM_2018_SRR7281056_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_11 | 14562 | 17012 | - | 4.A.1.1.8 |
| TF | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_12 | 17240 | 17959 | + | GntR |
| TC | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_13 | 18266 | 19582 | + | 3.A.1.1.45 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_14 | 19670 | 20524 | + | 3.A.1.1.45 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_15 | 20524 | 21363 | + | 3.A.1.1.45 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_16 | 21431 | 22630 | + | 3.A.1.1.22 |
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_17 | 23006 | 25273 | - | GT35 |
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_7663 | YassourM_2018_SRR7281056_bin.6_k119_7663_18 | 25403 | 26908 | - | GH77 |
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_11
Type: TC
Location: 14562 - 17012 (-)
Type: TC
Location: 14562 - 17012 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_12
Type: TF
Location: 17240 - 17959 (+)
Type: TF
Location: 17240 - 17959 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_13
Type: TC
Location: 18266 - 19582 (+)
Type: TC
Location: 18266 - 19582 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_14
Type: TC
Location: 19670 - 20524 (+)
Type: TC
Location: 19670 - 20524 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_15
Type: TC
Location: 20524 - 21363 (+)
Type: TC
Location: 20524 - 21363 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_16
Type: TC
Location: 21431 - 22630 (+)
Type: TC
Location: 21431 - 22630 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_17
Type: CAZyme
Location: 23006 - 25273 (-)
Type: CAZyme
Location: 23006 - 25273 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_7663_18
Type: CAZyme
Location: 25403 - 26908 (-)
Type: CAZyme
Location: 25403 - 26908 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.