Cluster: YassourM_2018_SRR7281056_bin.6_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: YassourM_2018_SRR7281056_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_16902 | YassourM_2018_SRR7281056_bin.6_k119_16902_14 | 19785 | 21263 | + | GH1 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_16902 | YassourM_2018_SRR7281056_bin.6_k119_16902_15 | 21275 | 22645 | + | 4.A.1.2.11 |
| pfam | YassourM_2018_SRR7281056_bin.6_k119_16902 | YassourM_2018_SRR7281056_bin.6_k119_16902_16 | 22771 | 24906 | - | Radical_SAM_N | DUF3362 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_16902 | YassourM_2018_SRR7281056_bin.6_k119_16902_17 | 25160 | 25876 | + | 9.B.143.2.3 |
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_16902_14
Type: CAZyme
Location: 19785 - 21263 (+)
Type: CAZyme
Location: 19785 - 21263 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_16902_15
Type: TC
Location: 21275 - 22645 (+)
Type: TC
Location: 21275 - 22645 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_16902_16
Type: pfam
Location: 22771 - 24906 (-)
Type: pfam
Location: 22771 - 24906 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_16902_17
Type: TC
Location: 25160 - 25876 (+)
Type: TC
Location: 25160 - 25876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| YassourM_2018_SRR7281056_bin.6_k119_16902_14 | vegan > omnivore | 1.23872 | 0.00455 |
| YassourM_2018_SRR7281056_bin.6_k119_16902_15 | vegan > omnivore | 1.17166 | 0.00455 |