Cluster: YassourM_2018_SRR7281056_bin.6_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: YassourM_2018_SRR7281056_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_3 | 1574 | 1912 | - | 4.A.3.1.2 |
| TF | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_4 | 2127 | 3131 | - | LacI |
| TC | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_5 | 3489 | 5264 | + | 4.A.3.1.1 |
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_6 | 5331 | 6770 | + | GH1 |
| TF | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_7 | 7038 | 8075 | - | LacI |
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_8 | 8417 | 9859 | + | GH1 |
| TC | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_9 | 10036 | 11796 | + | 4.A.3.1.1 |
| TF | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_10 | 12210 | 13220 | - | LacI |
| TC | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_11 | 13496 | 15253 | + | 4.A.3.1.1 |
| CAZyme | YassourM_2018_SRR7281056_bin.6_k119_10567 | YassourM_2018_SRR7281056_bin.6_k119_10567_12 | 15330 | 16751 | + | GH1 |
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_3
Type: TC
Location: 1574 - 1912 (-)
Type: TC
Location: 1574 - 1912 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_4
Type: TF
Location: 2127 - 3131 (-)
Type: TF
Location: 2127 - 3131 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_5
Type: TC
Location: 3489 - 5264 (+)
Type: TC
Location: 3489 - 5264 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_6
Type: CAZyme
Location: 5331 - 6770 (+)
Type: CAZyme
Location: 5331 - 6770 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_7
Type: TF
Location: 7038 - 8075 (-)
Type: TF
Location: 7038 - 8075 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_8
Type: CAZyme
Location: 8417 - 9859 (+)
Type: CAZyme
Location: 8417 - 9859 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_9
Type: TC
Location: 10036 - 11796 (+)
Type: TC
Location: 10036 - 11796 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_10
Type: TF
Location: 12210 - 13220 (-)
Type: TF
Location: 12210 - 13220 (-)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_11
Type: TC
Location: 13496 - 15253 (+)
Type: TC
Location: 13496 - 15253 (+)
Gene ID: YassourM_2018_SRR7281056_bin.6_k119_10567_12
Type: CAZyme
Location: 15330 - 16751 (+)
Type: CAZyme
Location: 15330 - 16751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| YassourM_2018_SRR7281056_bin.6_k119_10567_7 | vegetarian > omnivore | 1.02839 | 0.02677 |