Cluster: YassourM_2018_SRR7281045_bin.2_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: YassourM_2018_SRR7281045_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_6 | 4817 | 5155 | - | 4.A.3.1.2 |
| TF | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_7 | 5370 | 6374 | - | LacI |
| TC | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_8 | 6732 | 8507 | + | 4.A.3.1.1 |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_9 | 8574 | 10013 | + | GH1 |
| TF | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_10 | 10281 | 11318 | - | LacI |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_11 | 11660 | 13102 | + | GH1 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_12 | 13279 | 15039 | + | 4.A.3.1.1 |
| TF | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_13 | 15453 | 16463 | - | LacI |
| TC | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_14 | 16739 | 18517 | + | 4.A.3.1.1 |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_3072 | YassourM_2018_SRR7281045_bin.2_k119_3072_15 | 18592 | 20013 | + | GH1 |
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_6
Type: TC
Location: 4817 - 5155 (-)
Type: TC
Location: 4817 - 5155 (-)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_7
Type: TF
Location: 5370 - 6374 (-)
Type: TF
Location: 5370 - 6374 (-)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_8
Type: TC
Location: 6732 - 8507 (+)
Type: TC
Location: 6732 - 8507 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_9
Type: CAZyme
Location: 8574 - 10013 (+)
Type: CAZyme
Location: 8574 - 10013 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_10
Type: TF
Location: 10281 - 11318 (-)
Type: TF
Location: 10281 - 11318 (-)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_11
Type: CAZyme
Location: 11660 - 13102 (+)
Type: CAZyme
Location: 11660 - 13102 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_12
Type: TC
Location: 13279 - 15039 (+)
Type: TC
Location: 13279 - 15039 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_13
Type: TF
Location: 15453 - 16463 (-)
Type: TF
Location: 15453 - 16463 (-)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_14
Type: TC
Location: 16739 - 18517 (+)
Type: TC
Location: 16739 - 18517 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_3072_15
Type: CAZyme
Location: 18592 - 20013 (+)
Type: CAZyme
Location: 18592 - 20013 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.