Cluster: YassourM_2018_SRR7281045_bin.2_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: YassourM_2018_SRR7281045_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_44 | 44539 | 45981 | + | 3.A.1.8.1 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_45 | 45985 | 47055 | + | 3.A.1.1.3 |
| pfam | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_46 | 47485 | 48768 | + | HGD-D |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_47 | 48952 | 50562 | + | 3.A.1.5.11 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_48 | 50651 | 51604 | + | 3.A.1.5.39 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_49 | 51601 | 52431 | + | 3.A.1.5.39 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_50 | 52435 | 53430 | + | 3.A.1.5.35 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_51 | 53420 | 54205 | + | 3.A.1.5.36 |
| pfam | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_52 | 54282 | 55445 | + | HGD-D |
| pfam | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_53 | 55601 | 56365 | + | BcrAD_BadFG |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_2328 | YassourM_2018_SRR7281045_bin.2_k119_2328_54 | 56380 | 57597 | + | GT4 |
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_44
Type: TC
Location: 44539 - 45981 (+)
Type: TC
Location: 44539 - 45981 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_45
Type: TC
Location: 45985 - 47055 (+)
Type: TC
Location: 45985 - 47055 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_46
Type: pfam
Location: 47485 - 48768 (+)
Type: pfam
Location: 47485 - 48768 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_47
Type: TC
Location: 48952 - 50562 (+)
Type: TC
Location: 48952 - 50562 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_48
Type: TC
Location: 50651 - 51604 (+)
Type: TC
Location: 50651 - 51604 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_49
Type: TC
Location: 51601 - 52431 (+)
Type: TC
Location: 51601 - 52431 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_50
Type: TC
Location: 52435 - 53430 (+)
Type: TC
Location: 52435 - 53430 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_51
Type: TC
Location: 53420 - 54205 (+)
Type: TC
Location: 53420 - 54205 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_52
Type: pfam
Location: 54282 - 55445 (+)
Type: pfam
Location: 54282 - 55445 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_53
Type: pfam
Location: 55601 - 56365 (+)
Type: pfam
Location: 55601 - 56365 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_2328_54
Type: CAZyme
Location: 56380 - 57597 (+)
Type: CAZyme
Location: 56380 - 57597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| YassourM_2018_SRR7281045_bin.2_k119_2328_47 | vegan > omnivore | 3.20156 | 0.01144 |
| YassourM_2018_SRR7281045_bin.2_k119_2328_48 | vegan > omnivore | 2.67224 | 0.01144 |
| YassourM_2018_SRR7281045_bin.2_k119_2328_49 | vegan > omnivore | 2.89942 | 0.01144 |
| YassourM_2018_SRR7281045_bin.2_k119_2328_51 | vegan > omnivore | 2.81751 | 0.01144 |
| YassourM_2018_SRR7281045_bin.2_k119_2328_54 | vegan > omnivore | 1.44418 | 0.01144 |