Cluster: YassourM_2018_SRR7281045_bin.2_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: YassourM_2018_SRR7281045_bin.2
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_12 | 16959 | 17741 | + | 9.B.18.1.2 |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_13 | 17800 | 18846 | + | GT4 |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_14 | 18846 | 20129 | + | GT4 |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_15 | 20224 | 21237 | + | GT32 |
| NULL(UNKNOWN) | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_16 | 21234 | 21443 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_17 | 21440 | 22483 | + | GT2 |
| pfam | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_18 | 22498 | 23247 | + | Hexapep | Hexapep_2 |
| NULL(UNKNOWN) | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_19 | 23237 | 24583 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_6882 | YassourM_2018_SRR7281045_bin.2_k119_6882_20 | 24673 | 25422 | + | GT32 |
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_12
Type: TC
Location: 16959 - 17741 (+)
Type: TC
Location: 16959 - 17741 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_13
Type: CAZyme
Location: 17800 - 18846 (+)
Type: CAZyme
Location: 17800 - 18846 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_14
Type: CAZyme
Location: 18846 - 20129 (+)
Type: CAZyme
Location: 18846 - 20129 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_15
Type: CAZyme
Location: 20224 - 21237 (+)
Type: CAZyme
Location: 20224 - 21237 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_16
Type:
Location: 21234 - 21443 (+)
Type:
Location: 21234 - 21443 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_17
Type: CAZyme
Location: 21440 - 22483 (+)
Type: CAZyme
Location: 21440 - 22483 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_18
Type: pfam
Location: 22498 - 23247 (+)
Type: pfam
Location: 22498 - 23247 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_19
Type:
Location: 23237 - 24583 (+)
Type:
Location: 23237 - 24583 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_6882_20
Type: CAZyme
Location: 24673 - 25422 (+)
Type: CAZyme
Location: 24673 - 25422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.