Cluster: YassourM_2018_SRR7281045_bin.2_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: YassourM_2018_SRR7281045_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_48 | 51602 | 52045 | + | 4.A.6.1.16 |
| pfam | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_49 | 52045 | 52326 | + | YajC |
| TC | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_50 | 52363 | 52845 | + | 4.A.6.1.4 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_51 | 52936 | 53736 | + | 4.A.6.1.4 |
| TC | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_52 | 53726 | 54808 | + | 4.A.6.1.4 |
| TF | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_53 | 54994 | 55725 | + | GntR |
| STP | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_54 | 55840 | 57006 | + | SIS | SIS |
| CAZyme | YassourM_2018_SRR7281045_bin.2_k119_5494 | YassourM_2018_SRR7281045_bin.2_k119_5494_55 | 57124 | 58293 | + | CE9 |
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_48
Type: TC
Location: 51602 - 52045 (+)
Type: TC
Location: 51602 - 52045 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_49
Type: pfam
Location: 52045 - 52326 (+)
Type: pfam
Location: 52045 - 52326 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_50
Type: TC
Location: 52363 - 52845 (+)
Type: TC
Location: 52363 - 52845 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_51
Type: TC
Location: 52936 - 53736 (+)
Type: TC
Location: 52936 - 53736 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_52
Type: TC
Location: 53726 - 54808 (+)
Type: TC
Location: 53726 - 54808 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_53
Type: TF
Location: 54994 - 55725 (+)
Type: TF
Location: 54994 - 55725 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_54
Type: STP
Location: 55840 - 57006 (+)
Type: STP
Location: 55840 - 57006 (+)
Gene ID: YassourM_2018_SRR7281045_bin.2_k119_5494_55
Type: CAZyme
Location: 57124 - 58293 (+)
Type: CAZyme
Location: 57124 - 58293 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.