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Cluster: YassourM_2018_SRR7280819_bin.1_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_53 56329 57705 - GH13_20
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_54 57859 59055 - 2.A.1.2.18
NULL(UNKNOWN) YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_55 59231 59983 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_56 60149 61522 - GH4
TF YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_57 61698 62450 + HTH_6
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_58 62513 64177 - 4.A.1.1.3
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_59 64492 66852 - 9.A.8.1.6
NULL(UNKNOWN) YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_60 66923 67264 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_61 67393 68292 - S09.UPW
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_62 68537 69100 + 4.A.1.2.6
pfam YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_63 69282 70685 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_64 70944 71729 + NULL(UNKNOWN)
[View Structural Homologs]
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_65 71890 72870 + 3.A.1.34.1
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_66 73074 73997 + 3.A.1.34.1
TC YassourM_2018_SRR7280819_bin.1_k119_3684 YassourM_2018_SRR7280819_bin.1_k119_3684_67 73990 74784 + 3.A.1.34.1
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_53
Type: CAZyme
Location: 56329 - 57705 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_54
Type: TC
Location: 57859 - 59055 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_55
Type:
Location: 59231 - 59983 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_56
Type: CAZyme
Location: 60149 - 61522 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_57
Type: TF
Location: 61698 - 62450 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_58
Type: TC
Location: 62513 - 64177 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_59
Type: TC
Location: 64492 - 66852 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_60
Type:
Location: 66923 - 67264 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_61
Type: peptidase
Location: 67393 - 68292 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_62
Type: TC
Location: 68537 - 69100 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_63
Type: pfam
Location: 69282 - 70685 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_64
Type:
Location: 70944 - 71729 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_65
Type: TC
Location: 71890 - 72870 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_66
Type: TC
Location: 73074 - 73997 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_3684_67
Type: TC
Location: 73990 - 74784 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
YassourM_2018_SRR7280819_bin.1_k119_3684_55 vegan > omnivore 1.70740 0.00701
YassourM_2018_SRR7280819_bin.1_k119_3684_56 vegan > omnivore 1.51818 0.00701

🧭 Explore Read Mapping of CGC

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