Cluster: YassourM_2018_SRR7280819_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: YassourM_2018_SRR7280819_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_9 | 8102 | 9523 | - | GH1 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_10 | 9599 | 11386 | - | 4.A.3.1.1 |
| TF | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_11 | 11662 | 12672 | + | LacI |
| TC | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_12 | 12846 | 14606 | - | 4.A.3.1.1 |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_13 | 14782 | 16224 | - | GH1 |
| TF | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_14 | 16566 | 17603 | + | LacI |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_15 | 17871 | 19310 | - | GH1 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_16 | 19377 | 21152 | - | 4.A.3.1.1 |
| TF | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_17 | 21510 | 22514 | + | LacI |
| TC | YassourM_2018_SRR7280819_bin.1_k119_1532 | YassourM_2018_SRR7280819_bin.1_k119_1532_18 | 22729 | 23067 | + | 4.A.3.1.2 |
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_9
Type: CAZyme
Location: 8102 - 9523 (-)
Type: CAZyme
Location: 8102 - 9523 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_10
Type: TC
Location: 9599 - 11386 (-)
Type: TC
Location: 9599 - 11386 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_11
Type: TF
Location: 11662 - 12672 (+)
Type: TF
Location: 11662 - 12672 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_12
Type: TC
Location: 12846 - 14606 (-)
Type: TC
Location: 12846 - 14606 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_13
Type: CAZyme
Location: 14782 - 16224 (-)
Type: CAZyme
Location: 14782 - 16224 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_14
Type: TF
Location: 16566 - 17603 (+)
Type: TF
Location: 16566 - 17603 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_15
Type: CAZyme
Location: 17871 - 19310 (-)
Type: CAZyme
Location: 17871 - 19310 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_16
Type: TC
Location: 19377 - 21152 (-)
Type: TC
Location: 19377 - 21152 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_17
Type: TF
Location: 21510 - 22514 (+)
Type: TF
Location: 21510 - 22514 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_1532_18
Type: TC
Location: 22729 - 23067 (+)
Type: TC
Location: 22729 - 23067 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.