Cluster: YassourM_2018_SRR7280819_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: YassourM_2018_SRR7280819_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_7 | 7861 | 8862 | - | GT2 |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_8 | 8865 | 9575 | - | Hexapep | Hexapep_2 |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_9 | 9591 | 10628 | - | GT2 |
| NULL(UNKNOWN) | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_10 | 10644 | 11198 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_11 | 11182 | 12057 | - | LicD |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_12 | 12059 | 13168 | - | GT4 |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_13 | 13165 | 14274 | - | Epimerase_2 |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_14 | 14267 | 15073 | - | GT26 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_12318 | YassourM_2018_SRR7280819_bin.1_k119_12318_15 | 15060 | 15809 | - | 9.B.18.1.2 |
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_7
Type: CAZyme
Location: 7861 - 8862 (-)
Type: CAZyme
Location: 7861 - 8862 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_8
Type: pfam
Location: 8865 - 9575 (-)
Type: pfam
Location: 8865 - 9575 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_9
Type: CAZyme
Location: 9591 - 10628 (-)
Type: CAZyme
Location: 9591 - 10628 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_10
Type:
Location: 10644 - 11198 (-)
Type:
Location: 10644 - 11198 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_11
Type: pfam
Location: 11182 - 12057 (-)
Type: pfam
Location: 11182 - 12057 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_12
Type: CAZyme
Location: 12059 - 13168 (-)
Type: CAZyme
Location: 12059 - 13168 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_13
Type: pfam
Location: 13165 - 14274 (-)
Type: pfam
Location: 13165 - 14274 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_14
Type: CAZyme
Location: 14267 - 15073 (-)
Type: CAZyme
Location: 14267 - 15073 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12318_15
Type: TC
Location: 15060 - 15809 (-)
Type: TC
Location: 15060 - 15809 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.