Cluster: YassourM_2018_SRR7280819_bin.1_CGC16
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: YassourM_2018_SRR7280819_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_2 | 2314 | 2640 | + | 4.A.3.2.7 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_3 | 2687 | 2980 | + | 4.A.3.2.6 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_4 | 2990 | 4339 | + | 4.A.3.2.6 |
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_5 | 4341 | 5795 | + | GH1 |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_6 | 6249 | 7379 | - | Peptidase_C70 | Peptidase_C39_2 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_7 | 7577 | 9055 | - | 2.A.118.1.1 |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_8 | 9487 | 10494 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_9 | 10616 | 11473 | - | ADI | ADI | DDAH_eukar |
| TC | YassourM_2018_SRR7280819_bin.1_k119_12057 | YassourM_2018_SRR7280819_bin.1_k119_12057_10 | 11586 | 13103 | - | 2.A.118.1.6 |
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_2
Type: TC
Location: 2314 - 2640 (+)
Type: TC
Location: 2314 - 2640 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_3
Type: TC
Location: 2687 - 2980 (+)
Type: TC
Location: 2687 - 2980 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_4
Type: TC
Location: 2990 - 4339 (+)
Type: TC
Location: 2990 - 4339 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_5
Type: CAZyme
Location: 4341 - 5795 (+)
Type: CAZyme
Location: 4341 - 5795 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_6
Type: pfam
Location: 6249 - 7379 (-)
Type: pfam
Location: 6249 - 7379 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_7
Type: TC
Location: 7577 - 9055 (-)
Type: TC
Location: 7577 - 9055 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_8
Type: pfam
Location: 9487 - 10494 (-)
Type: pfam
Location: 9487 - 10494 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_9
Type: pfam
Location: 10616 - 11473 (-)
Type: pfam
Location: 10616 - 11473 (-)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_12057_10
Type: TC
Location: 11586 - 13103 (-)
Type: TC
Location: 11586 - 13103 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| YassourM_2018_SRR7280819_bin.1_k119_12057_3 | vegetarian > vegan | 2.06547 | 0.04870 |
| YassourM_2018_SRR7280819_bin.1_k119_12057_4 | vegetarian > vegan | 1.82358 | 0.04870 |
| YassourM_2018_SRR7280819_bin.1_k119_12057_5 | vegetarian > vegan | 2.08097 | 0.03330 |