Cluster: YassourM_2018_SRR7280819_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: YassourM_2018_SRR7280819_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | YassourM_2018_SRR7280819_bin.1_k119_6739 | YassourM_2018_SRR7280819_bin.1_k119_6739_31 | 39506 | 40912 | + | CE4 |
| STP | YassourM_2018_SRR7280819_bin.1_k119_6739 | YassourM_2018_SRR7280819_bin.1_k119_6739_32 | 41241 | 43085 | + | CBS | CBS |
| TC | YassourM_2018_SRR7280819_bin.1_k119_6739 | YassourM_2018_SRR7280819_bin.1_k119_6739_33 | 43094 | 44356 | + | 2.A.55.3.6 |
| TC | YassourM_2018_SRR7280819_bin.1_k119_6739 | YassourM_2018_SRR7280819_bin.1_k119_6739_34 | 44468 | 46684 | - | 9.B.97.5.1 |
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_6739_31
Type: CAZyme
Location: 39506 - 40912 (+)
Type: CAZyme
Location: 39506 - 40912 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_6739_32
Type: STP
Location: 41241 - 43085 (+)
Type: STP
Location: 41241 - 43085 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_6739_33
Type: TC
Location: 43094 - 44356 (+)
Type: TC
Location: 43094 - 44356 (+)
Gene ID: YassourM_2018_SRR7280819_bin.1_k119_6739_34
Type: TC
Location: 44468 - 46684 (-)
Type: TC
Location: 44468 - 46684 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.