Cluster: WampachL_2018_SRR5575366_bin.4_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575366_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_187 | 234719 | 235687 | - | CE14 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_188 | 236105 | 236602 | + | GreA_GreB | GreA_GreB_N |
| STP | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_189 | 236773 | 238098 | - | ACT | PALP |
| TC | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_190 | 238238 | 239464 | - | 2.A.86.1.6 |
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_187
Type: CAZyme
Location: 234719 - 235687 (-)
Type: CAZyme
Location: 234719 - 235687 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_188
Type: pfam
Location: 236105 - 236602 (+)
Type: pfam
Location: 236105 - 236602 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_189
Type: STP
Location: 236773 - 238098 (-)
Type: STP
Location: 236773 - 238098 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_190
Type: TC
Location: 238238 - 239464 (-)
Type: TC
Location: 238238 - 239464 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp029850875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.