Cluster: WampachL_2018_SRR5575366_bin.4_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: WampachL_2018_SRR5575366_bin.4
- CGC Family ID: CGCFAM_02621
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_160 | 204267 | 206096 | + | 3.A.1.120.5 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_161 | 206318 | 207259 | + | GT2 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_162 | 207338 | 208531 | - | GT4 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_163 | 208616 | 209605 | - | GHMP_kinases_N | GHMP_kinases_C |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_164 | 209674 | 210546 | - | RrnaAD |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_165 | 210585 | 211406 | - | GT25 |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_166 | 211729 | 212556 | - | GT25 |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_167 | 212773 | 213846 | - | TatD_DNase |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_168 | 213899 | 214846 | - | TP_methylase | RsmI_C |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_169 | 215045 | 216682 | + | GT39 |
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_160
Type: TC
Location: 204267 - 206096 (+)
Type: TC
Location: 204267 - 206096 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_161
Type: CAZyme
Location: 206318 - 207259 (+)
Type: CAZyme
Location: 206318 - 207259 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_162
Type: CAZyme
Location: 207338 - 208531 (-)
Type: CAZyme
Location: 207338 - 208531 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_163
Type: pfam
Location: 208616 - 209605 (-)
Type: pfam
Location: 208616 - 209605 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_164
Type: pfam
Location: 209674 - 210546 (-)
Type: pfam
Location: 209674 - 210546 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_165
Type: CAZyme
Location: 210585 - 211406 (-)
Type: CAZyme
Location: 210585 - 211406 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_166
Type: CAZyme
Location: 211729 - 212556 (-)
Type: CAZyme
Location: 211729 - 212556 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_167
Type: pfam
Location: 212773 - 213846 (-)
Type: pfam
Location: 212773 - 213846 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_168
Type: pfam
Location: 213899 - 214846 (-)
Type: pfam
Location: 213899 - 214846 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_169
Type: CAZyme
Location: 215045 - 216682 (+)
Type: CAZyme
Location: 215045 - 216682 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp029850875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.