Cluster: WampachL_2018_SRR5575366_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575366_bin.4
- CGC Family ID: CGCFAM_11189
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_84 | 104854 | 107088 | - | 3.A.3.5.10 |
| STP | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_85 | 107139 | 107465 | - | HMA |
| pfam | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_86 | 108029 | 108253 | + | CueP |
| CAZyme | WampachL_2018_SRR5575366_bin.4_k141_2699 | WampachL_2018_SRR5575366_bin.4_k141_2699_87 | 108325 | 109794 | + | AA1 |
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_84
Type: TC
Location: 104854 - 107088 (-)
Type: TC
Location: 104854 - 107088 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_85
Type: STP
Location: 107139 - 107465 (-)
Type: STP
Location: 107139 - 107465 (-)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_86
Type: pfam
Location: 108029 - 108253 (+)
Type: pfam
Location: 108029 - 108253 (+)
Gene ID: WampachL_2018_SRR5575366_bin.4_k141_2699_87
Type: CAZyme
Location: 108325 - 109794 (+)
Type: CAZyme
Location: 108325 - 109794 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Micrococcaceae
Genus
Rothia
Species
Rothia sp029850875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.