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Cluster: WampachL_2018_SRR5575354_bin.4_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_64 56665 58509 - 3.A.1.106.2
TF WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_65 58586 59476 - HTH_AraC | HTH_AraC
pfam WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_66 59580 59924 + CMD
CAZyme WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_67 59995 61050 - GT9
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_64
Type: TC
Location: 56665 - 58509 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_65
Type: TF
Location: 58586 - 59476 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_66
Type: pfam
Location: 59580 - 59924 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_67
Type: CAZyme
Location: 59995 - 61050 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_4809_65 vegetarian > vegan 1.17448 0.02923
WampachL_2018_SRR5575354_bin.4_k141_4809_66 vegan > omnivore 1.27320 0.01786
WampachL_2018_SRR5575354_bin.4_k141_4809_66 vegetarian > omnivore 1.56961 0.01162
WampachL_2018_SRR5575354_bin.4_k141_4809_67 vegetarian > vegan 1.06969 0.03086

🧭 Explore Read Mapping of CGC

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