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Cluster: WampachL_2018_SRR5575354_bin.4_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_345 363355 365610 - 1.B.14.1.3
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_346 365852 366559 + 2.A.88.8.6
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_347 366574 367890 + 2.A.1.15.11
peptidase WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_348 368111 368938 + C44.UPW
STP WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_349 369007 370377 - Pyr_redox_2
CAZyme WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_350 370596 371723 + GT2
CAZyme WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_351 371758 372732 + GT2
CAZyme WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_352 372764 373591 - GT8
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_353 373748 378556 - 1.B.40.2.2
pfam WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_354 378955 379374 + 4HBT
pfam WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_355 379371 380342 + Ferrochelatase
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_356 380799 381842 - 1.B.1.3.1
pfam WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_357 382155 383138 - tRNA-synt_2
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_358 383419 385218 + 3.D.10.1.4
TC WampachL_2018_SRR5575354_bin.4_k141_3860 WampachL_2018_SRR5575354_bin.4_k141_3860_359 385211 385981 + 3.D.10.1.4
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_345
Type: TC
Location: 363355 - 365610 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_346
Type: TC
Location: 365852 - 366559 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_347
Type: TC
Location: 366574 - 367890 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_348
Type: peptidase
Location: 368111 - 368938 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_349
Type: STP
Location: 369007 - 370377 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_350
Type: CAZyme
Location: 370596 - 371723 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_351
Type: CAZyme
Location: 371758 - 372732 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_352
Type: CAZyme
Location: 372764 - 373591 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_353
Type: TC
Location: 373748 - 378556 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_354
Type: pfam
Location: 378955 - 379374 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_355
Type: pfam
Location: 379371 - 380342 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_356
Type: TC
Location: 380799 - 381842 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_357
Type: pfam
Location: 382155 - 383138 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_358
Type: TC
Location: 383419 - 385218 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_359
Type: TC
Location: 385211 - 385981 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_3860_348 vegan > omnivore 1.88437 0.01786
WampachL_2018_SRR5575354_bin.4_k141_3860_348 vegetarian > omnivore 1.16926 0.01162

🧭 Explore Read Mapping of CGC

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