Cluster: WampachL_2018_SRR5575354_bin.4_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_3860 | WampachL_2018_SRR5575354_bin.4_k141_3860_138 | 149320 | 150372 | - | GT28 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3860 | WampachL_2018_SRR5575354_bin.4_k141_3860_139 | 150381 | 151565 | - | 2.A.103.1.1 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_3860 | WampachL_2018_SRR5575354_bin.4_k141_3860_140 | 151581 | 152894 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3860 | WampachL_2018_SRR5575354_bin.4_k141_3860_141 | 152957 | 154039 | - | 9.B.146.1.6 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_138
Type: CAZyme
Location: 149320 - 150372 (-)
Type: CAZyme
Location: 149320 - 150372 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_139
Type: TC
Location: 150381 - 151565 (-)
Type: TC
Location: 150381 - 151565 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_140
Type: pfam
Location: 151581 - 152894 (-)
Type: pfam
Location: 151581 - 152894 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3860_141
Type: TC
Location: 152957 - 154039 (-)
Type: TC
Location: 152957 - 154039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_3860_141 | vegetarian > omnivore | 1.03481 | 0.01162 |